Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60575g00010 ATGTCTTCTTCGTCTCCGGATCACTCCACTACCGCCTCTAGCGTGGTGTGCGTCGAAGACGCCAGCAAAGAAATCTCCGATCATCCTTCTCCGCCGTCACTGCCAACACTCTGGCGGCCCTACGACGATGATTCGGACATCAGCGAACTCATCGAGGCAGAGGCGCAGCACATGGTGGCGGCGGATTACCTGCGGCGGTGCGGCGATGGTTCGGTGGACGTGAGCGCACGGTTGGACGCGATCAACTGGATTTTAAAGGTGCAGGAATTCTATTCGTTCCATCCAGTAACGGCTTTTCTTTCCATCAACTACATGGATCGCTTCCTCTCCCTCGTCTCTCTTCCGCGTGGGAGTAGTGGGTGGCCATTTCAGCTACTATCGGTTGCGTGTTTGTCCGTGGCGGCCAAAATGGAGGAGCCTCAAGTGCCTCTCTTGCTTGATCTCCAGCTTTTCCACCGTACCTTCGTCTTTCACCCCAAAACCCTTCAGAGGATGGAGCTTTGCCTCATGTCTAATCTCAAATGGACACTCCGCTCCGTTACCCCCTTCCATTACCTTCACTGTTACTTCACCAACCTCCCTTCTTCTTCTTCTTCCTTCAACCGCGTACAGTTACTCTCCGCTGCCTCCCACCTCATCCTCGCCACCACCCGTGGTAATGTAAATCTACCGTTCTTCTATCTCTTTCCTCATACTTTTCTGTTTACTCTTGTTTTGATTTTATTTGTGGCCATGTGGTTAGTGATTGAGTTCTTGGAGTTTCCGCCGTCCGCCGTTGCAGCCGCCGCAGTCCTCTGCTCAGCTGGCTACCACCACCCTGATATCCCCATGTGTTTCCATCAGAGAGTAAACCATGAAATGGTGAGACGCTGTCACCAACTAATGGAGGAGTATGTGGTGGACACGTGTCCCGCATCCACCACAAAAGCCACGCGAAGCGACCCGCCACCTCAAAGCCCCGTCGGCGTCCTCGACGTCGCCCCCTGTGCCAGCTGCGACACCCCTTCCTCAGCCCACCCCCAACATGAGCCGCCAAACAAGCGGCTGCGATCCTCTGCCCCGGATGTACAGCAGCCGTAG 1080 0.55 MSSSSPDHSTTASSVVCVEDASKEISDHPSPPSLPTLWRPYDDDSDISELIEAEAQHMVAADYLRRCGDGSVDVSARLDAINWILKVQEFYSFHPVTAFLSINYMDRFLSLVSLPRGSSGWPFQLLSVACLSVAAKMEEPQVPLLLDLQLFHRTFVFHPKTLQRMELCLMSNLKWTLRSVTPFHYLHCYFTNLPSSSSSFNRVQLLSAASHLILATTRGNVNLPFFYLFPHTFLFTLVLILFVAMWLVIEFLEFPPSAVAAAAVLCSAGYHHPDIPMCFHQRVNHEMVRRCHQLMEEYVVDTCPASTTKATRSDPPPQSPVGVLDVAPCASCDTPSSAHPQHEPPNKRLRSSAPDVQQP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60575g00010 359 CDD CYCLIN_AtCycD-like_rpt1 76 175 - -
Stsc60575g00010 359 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Stsc60575g00010 359 Pfam Cyclin, C-terminal domain 242 311 IPR004367 -
Stsc60575g00010 359 SMART Cyclin_C_2 180 332 IPR004367 -
Stsc60575g00010 359 SUPERFAMILY Cyclin-like 40 177 IPR036915 -
Stsc60575g00010 359 Gene3D - 60 178 - -
Stsc60575g00010 359 SMART cyclin_7 82 171 IPR013763 -
Stsc60575g00010 359 MobiDBLite consensus disorder prediction 331 359 - -
Stsc60575g00010 359 Gene3D - 49 270 - -
Stsc60575g00010 359 PANTHER CYCLINS 43 300 IPR039361 -
Stsc60575g00010 359 FunFam D6-type cyclin 60 178 - -
Stsc60575g00010 359 Pfam Cyclin, N-terminal domain 49 177 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60575g00010 Stsc-Chr60575 40427 42889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60575g00010 18 269 Core Cell Cycle Gene Families AT5G65420 38.189 1.13e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60575g00010 K18810 - gmx:100776178 359.377