Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60575g00007 ATGGCCACCTTCGGAGGAACCCAGCAAAAGTGCATGGCATGTGACAAGACGGTGTACCTCGTTGATAAGCTTACCGCCGATGGCCGTATCTTTCATAAGGCCTGCTTCCGTTGCCACCATTGCCGGAGCACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGCGTGCTTTACTGCAGACCACATTATGATCAACTCTACAAGAGAACTGGCAGCTTAGACAAAAGCTTCGAAGGAACACCCAAAGTCCAGAGAGAAAGGCAAACCCCTGAAATTGAGAGAAGTCCTAAACAAATCACAAACGTGTTCGTGGGCACCACAGACAAATGTGTGTGCTGCAAAAAGACAGTGTATCCCACTGAGAGGGTTACAATTAATGGAACTCCTTACCATAGGGGCTGCTTCAAATGTACATATGGAGGTTGCACTATAAGCTCATCAAACTTTGTTACACATGAGGGGAAGCTCTATTGCAAACACCATCACATTCAACTCTTCAAAGAGAAAGGCAATTATAGCCAGCTCGAGAATGACGTCAACACCGTTGCTGCTTAA 555 0.4631 MATFGGTQQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQRERQTPEIERSPKQITNVFVGTTDKCVCCKKTVYPTERVTINGTPYHRGCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDVNTVAA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60575g00007 184 FunFam LIM domain and actin-binding 1 104 174 - -
Stsc60575g00007 184 PANTHER OS06G0237300 PROTEIN 3 86 - -
Stsc60575g00007 184 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Stsc60575g00007 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Stsc60575g00007 184 Gene3D Cysteine Rich Protein 104 174 - -
Stsc60575g00007 184 Gene3D Cysteine Rich Protein 6 75 - -
Stsc60575g00007 184 FunFam LIM domain and actin-binding 1 5 75 - -
Stsc60575g00007 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Stsc60575g00007 184 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Stsc60575g00007 184 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Stsc60575g00007 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Stsc60575g00007 184 SMART lim_4 109 161 IPR001781 -
Stsc60575g00007 184 SMART lim_4 10 62 IPR001781 -
Stsc60575g00007 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Stsc60575g00007 184 Pfam LIM domain 11 65 IPR001781 -
Stsc60575g00007 184 Pfam LIM domain 110 165 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60575g00007 Stsc-Chr60575 23684 24677 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Stsc60575g00007 LIM 1.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60575g00007 K09377 - gmx:100306027 332.028