Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60574g00006 ATGAAAAGCAGTCACAACAGCAAGGCCTGTGCTGCATGCAAATTCCAAAGGCGAAGGTGCACTAAAGACTGCATTCTCGCGCCTTATTTTCCGGCGGACAAACCGAAAGCATTCACCAACGCTCACCGTTTGTTTGGAGTCTGCAACATGACGAGGATTCTTAACAAGATCGATCCGGAACAGAGAGACGAGTGCATGAAATCAATTATCTTTGAATCCGATATGCGAGCGAAGTTTCCAGTACACGGTTGTTACGGTATCCTTAATCACTATGTTGATCTTATAGCTCAGATCACAGAGGAGTTACGCTTGGTTCGGATGTGGATTGCTTATTTCAAGCAGCAACAAGAGCAGCAGTACCACCAACCGCAGCAACAACATCTTCCTTTATCGCATCAGTATGAATTGTTTCAACCTTCATCTGAATTTTCTTCTTTAAACGTCTACAATGAAAGCAGAGATAATTATAGTGTTGAGGAGGTGAATTTGGATGATAAATTCTACTCCAAACTCGAAGCGTTGTCTGTGTATGGACAATTTTCGGATGCAAAACCTTCAATAGTTAGATTAGGTGAAGGAATTGCGGATCAGATCTACACTGGTCCTGAGTTGAGATCAATAGAAGTTTCTACAACAGATACCAAGGCCAATGCAGTAAATGATAGCGAAGAAAACAATAATATCGACCACTACAATGAACTATCTTTTCATGATAGACAATCATTTGTCGAACACAGCCAAAAAGGAAGCAATGCAACATCATCACAGATGGATTAA 777 0.4106 MKSSHNSKACAACKFQRRRCTKDCILAPYFPADKPKAFTNAHRLFGVCNMTRILNKIDPEQRDECMKSIIFESDMRAKFPVHGCYGILNHYVDLIAQITEELRLVRMWIAYFKQQQEQQYHQPQQQHLPLSHQYELFQPSSEFSSLNVYNESRDNYSVEEVNLDDKFYSKLEALSVYGQFSDAKPSIVRLGEGIADQIYTGPELRSIEVSTTDTKANAVNDSEENNNIDHYNELSFHDRQSFVEHSQKGSNATSSQMD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60574g00006 258 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Stsc60574g00006 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 138 - -
Stsc60574g00006 258 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60574g00006 Stsc-Chr60574 46908 47767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60574g00006 8 161 AS2 family AT3G13850 42.675 8.79e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc60574g00006 LOB 1.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60574g00006 - - aip:107621446 204.912