Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60572g00010 ATGGGAAGCCCGACACTCAAATCCGATGAAACTTTTCCGGCTGCAGACGTTGCGGCTGAGCTAAACCCTGGAAATAACACCCATGTTCATGTTGATCCTATATCATCCGAGGTGGCGGCTGCCAAGGAAATTAAGGAAACTGAAGAGATGAAGAAGGAAAGACAAAAGAAGGAAGCGTTGCAAAAGCTGAAATCAGGCATTATAATCACAGCGGTAGTTGTGGCTGTGGCAGGTGAAATCCAGCAACCAAACCACTCACGCAAGAATATGGACACATCAAATCCTGCAGTCTTTGTCAATGCCGAACTGTTGCAGTTTTATGTTGGAAGGAGGGTTCGGGCTGTGATTCAGATTTTGCAATCCGAGGGTGGAGTTGTCATCGGAAAATCAACAGATGAGAGGCAGCTAGTTGTGAAAGGACCACCCCCACCTGTCCCTCTTACAAATTTTGTCGAAGTTATTGGCATTGTTGACAATGATAGATCCATTCGAGCTGAGATATGGACCAATTTTGGCAATGCGATTGATATGTTCAGCTACAATAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAGCACTTGTTTGTGTGA 591 0.4467 MGSPTLKSDETFPAADVAAELNPGNNTHVHVDPISSEVAAAKEIKETEEMKKERQKKEALQKLKSGIIITAVVVAVAGEIQQPNHSRKNMDTSNPAVFVNAELLQFYVGRRVRAVIQILQSEGGVVIGKSTDERQLVVKGPPPPVPLTNFVEVIGIVDNDRSIRAEIWTNFGNAIDMFSYNKLCQLANGEFKHLFV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60572g00010 196 SUPERFAMILY Nucleic acid-binding proteins 95 195 IPR012340 -
Stsc60572g00010 196 Gene3D - 90 196 IPR012340 -
Stsc60572g00010 196 Pfam Replication factor A protein 3 90 192 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc60572g00010 196 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 86 196 - -
Stsc60572g00010 196 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60572g00010 Stsc-Chr60572 52032 55049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60572g00010 90 196 Core DNA Replication Machinery Family AT4G18590 62.617 2.13e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60572g00010 K10740 - vvi:100264936 170.629