Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60571g00011 ATGGAAACTTCACTTTCTAACATTGAAAGACCTACAAAACATCTCAAGAACAATAGCTGGTGTCCCACTAAGACTCCATCAGAGGCACAATTTGCTTCTTGCTCAACTCTTCTTTCATTTGTGGATCCAAATTATATAAACCAGTTGGAAATGGTGAAGTCTAAGGATGAGATGGTTTGTCCTAAAATGAATGATGCAACTCCTAAAGACATGACCTCTCAAGGAACCTTAGGGAATCAAAACTATGTGTTTGAGGCTACCCAGGAGACTAAGCATGTAGGGCCACGTTCTAGAATTTCTCAACCTCAAGACCACATAATAGCCGAAAGGAAGCGACGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTGAAGCAATTGCAAGAGAAGGTGAAGGCTCTTGAGGAGGAACAGAACATGAGAAAAGCAGTGGAATCTGTAGTATTTGTGAAAAAATTTCAATTATCCAATAATGCAGAAGACAATTCTTTAGAATCTGAGGGTCTCTTTCATGAGGCACTACCTGAAATTGAAGCAAGATTCTGTGATAAAAATGTTCTCATAAGAATCCACTGTGAGAAGAACAGAGGAGTTGTAGAAAAGGCAATCAATCAAATTGAGAAACTCCATCTAAAAGTTACCAACAGCAGTGCCATGTCATTTGGGAGTTGTGCCTTAGACATAACTATTATTGCTCAGATGGAAGAGGGATTCAGCATGACAGTGAAGGAGCTTGTGAGAAACCTGCGCTCAGCTTTTGCATCTATCATTTGA 840 0.4048 METSLSNIERPTKHLKNNSWCPTKTPSEAQFASCSTLLSFVDPNYINQLEMVKSKDEMVCPKMNDATPKDMTSQGTLGNQNYVFEATQETKHVGPRSRISQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNMRKAVESVVFVKKFQLSNNAEDNSLESEGLFHEALPEIEARFCDKNVLIRIHCEKNRGVVEKAINQIEKLHLKVTNSSAMSFGSCALDITIIAQMEEGFSMTVKELVRNLRSAFASII 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60571g00011 279 Pfam Helix-loop-helix DNA-binding domain 103 150 IPR011598 GO:0046983
Stsc60571g00011 279 SMART finulus 106 155 IPR011598 GO:0046983
Stsc60571g00011 279 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60571g00011 279 Gene3D - 98 175 IPR036638 GO:0046983
Stsc60571g00011 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 164 IPR036638 GO:0046983
Stsc60571g00011 279 Coils Coil 139 166 - -
Stsc60571g00011 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Stsc60571g00011 279 PANTHER BHLH TRANSCRIPTION FACTOR 12 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60571g00011 Stsc-Chr60571 51559 53206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60571g00011 11 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.366 1.54e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60571g00011 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60571g00011 - - aprc:113852973 374.785