Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60570g00015 ATGATGTGTACTGGTGATGAGCCTTTGGATTTGTATAAGTTATTCATGGTGGTCAAGGAGAAAGGCGGTTATGATGCTGTTTGTAAGAACATGCTGTGGGATTTGGTTGCTGAAGAATATGGTTTGGGTTTAAATGTTGGTTCGTCTGTTGAACTTGTTTATAGTAAGCACTTGAGTACATTAGAGACATGGCTGAAGAATGTTGCTGATAGTAAGTTCCCTGAGTGTGGTTTAATGGATGATAGGGTTAGTTTCGGTAAGAAGTTGATGGAGGTGCAGGCCGATTTCTTGTTGGATGTTTACAGCGAGGAAGGGGCAGGGGATGAAATCAAGACGGTATGTGATTTCTTAGATGGAAGGAAGTTGTGTGGAACTAATAGAGTTAGGGGATTGAATCCTGAGCTCAGCGGTGCAAAGAAAATTGTTGATTTGAACGCACTGGACCGGAAGATGAATGGGCCTAGTATTGGAAACTTTTGCAGCCATAACTTTTCAAATAATTCAGGTGATAAACTGGATCATTTGAATGAAATTAAGACAACAGCAATGGACATATCTGACGAAGTAAATACAATGCCTGCATTATCGGAAGAAGGTGATAAATGTGATAAAAATGACTGTCATGATGACGGTGATGATTATGTGATTGTATTGGATCCATCCACTGTTAATAAAGAGAGCTTTGGTCGAAAGAGGAAGAGAGAGTCTGTGTCTGAAATGCTAAGCTGGCTTACTGGTATTGCTAAGAATCCTTGTGATCCTGCCGTTGGTTCAATGCCCGAAAAGTCAAAGTGGAAATCTTACGGTAGCGAGGAGATCTGGAAACAGGTTTTGCTGTTTCGGCAAGCCACCTTTTTTAGGAGTGAACATGTCAGTTGGCAGAGCCAGAAGATGCATCCTTGCATGTATGATGATCAGGTTGGGGCAAACTACAATCTCAGGGAGAGATTAAAAAGTGACAAGAAATCGACATCTGGTGATGGCTCTTCAAATGCTGGAGGAACAGAGGGAGGTTCCGAGAGAAGTCCAACTCCTCATTCTAGTAATGAGAAATGGTCACTTGATGAATCCGCCACAGTGCCCATTCCTATCGGGCCGTCCCATCAAGCCAAAGTTCCTGAATGGACTGGCAAGGCCACTGAGAGTGATTCAAAGTGGTTTGGAAGCCAAATATGGCCAGCCGCAAAGGTGAATACCAATCTTATCGAAAGGGATCCCGTTGGAGCTGGAAGAAAAGATTCATGTGGCTGCCAATTTCCAGGTTCTGTTGAGTGTGTCCAATTCCACGTTGCGCAGAAAAGGGCTAAACTTAAGCTAGAATTGGGTGAGGCATTTTACAAGTTGAATTTACATAAGATGGGGGAAGATGTTAGGCGATTGTGGACAGAACAAGACGAGAAGAAGTTTAAGGATGTGGTGAAAGCAAACCCTCTTACACCGGACACATGTTTCTGGGAACAAATTTTCAAATCATTTCCTAGAAAGAGCAGAGAAGATTTGGTGAGTTACTACTTCAATGTCTTCCTATTGCAGCGAAGAGGACACCAGAATAGGAATACTCCTAATGACATCAACAGCGATGATGATGAAGCAGAATATGGACCATTAAAGAATTCTTTCGGACATAACACAATTAACCCACGCAGTACCTTATTATCACCTAAGAAGCCTAAGACAAAGGGAAGATAG 1689 0.4239 MMCTGDEPLDLYKLFMVVKEKGGYDAVCKNMLWDLVAEEYGLGLNVGSSVELVYSKHLSTLETWLKNVADSKFPECGLMDDRVSFGKKLMEVQADFLLDVYSEEGAGDEIKTVCDFLDGRKLCGTNRVRGLNPELSGAKKIVDLNALDRKMNGPSIGNFCSHNFSNNSGDKLDHLNEIKTTAMDISDEVNTMPALSEEGDKCDKNDCHDDGDDYVIVLDPSTVNKESFGRKRKRESVSEMLSWLTGIAKNPCDPAVGSMPEKSKWKSYGSEEIWKQVLLFRQATFFRSEHVSWQSQKMHPCMYDDQVGANYNLRERLKSDKKSTSGDGSSNAGGTEGGSERSPTPHSSNEKWSLDESATVPIPIGPSHQAKVPEWTGKATESDSKWFGSQIWPAAKVNTNLIERDPVGAGRKDSCGCQFPGSVECVQFHVAQKRAKLKLELGEAFYKLNLHKMGEDVRRLWTEQDEKKFKDVVKANPLTPDTCFWEQIFKSFPRKSREDLVSYYFNVFLLQRRGHQNRNTPNDINSDDDEAEYGPLKNSFGHNTINPRSTLLSPKKPKTKGR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60570g00015 562 MobiDBLite consensus disorder prediction 516 562 - -
Stsc60570g00015 562 Pfam ARID/BRIGHT DNA binding domain 5 61 IPR001606 GO:0003677
Stsc60570g00015 562 Gene3D - 1 74 IPR036431 GO:0003677
Stsc60570g00015 562 SMART bright_3 2 67 IPR001606 GO:0003677
Stsc60570g00015 562 MobiDBLite consensus disorder prediction 539 553 - -
Stsc60570g00015 562 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 2 557 - -
Stsc60570g00015 562 MobiDBLite consensus disorder prediction 324 355 - -
Stsc60570g00015 562 CDD ARID 5 62 - -
Stsc60570g00015 562 SMART sant 457 510 IPR001005 -
Stsc60570g00015 562 MobiDBLite consensus disorder prediction 318 379 - -
Stsc60570g00015 562 CDD SANT 461 508 IPR001005 -
Stsc60570g00015 562 ProSiteProfiles ARID domain profile. 1 66 IPR001606 GO:0003677
Stsc60570g00015 562 SUPERFAMILY ARID-like 5 74 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60570g00015 Stsc-Chr60570 68639 83091 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc60570g00015 ARID 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60570g00015 - - adu:107485800 744.962