Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60567g00007 ATGTCTCCCACAACCCCTTCCCTTCTCGACACCCTCCTCTGCCAAGAAGAACACGAAGACACCTTTGAAAACGATGACGAATCACCGTCGTTTTGCCCCACAAAGCTCCAACCTTTCCCTCGCCCTGTTCTCCATGACAACGACCTCTTCTGGGAACCCGACGAGCTTGCCTCCTTAATCTCCAAAGAGGAAGACACCCACGCCGACCACGACCACCGTGATGGGCTTCGAGTTGGGCCTGTTGCCTGGATCACTAACGTGTGCGGCCACTACGGGTTTTCAGCTTTAACCACCGTCCTCGCCGTTAACTACTTCGACAGGTTCGTCACGAGCCTCACGTTTCAAAGCGACAAGCCATGGATGACTCAGTTAACGGCAGTTGCGTGCTTATCCCTCGCTGCAAAGATGGAAGAGACACATGTGGAAGAATCGAGGTTTGTGTTTGAAGCGAAGACAATACAAAGAATGGAGCTTCTTGTGTTGTCTACATTCAAATGGAGGATGCATCCGGTGACCCCAATTTCTTTCTTTGAACACATTGTAAGAAGGCTTGGCCTCAAGAGTCGCTTGCATTGGGAATTTCTATGGAGGTGTGAAAGGGTTCTTCTTGGCGTCATTGCTGATTCAAGGGTTATGAGTTATCGTCCGTCTACATTGGCTGCAGCTACAATGATCCATGTTATTAAAGAGATTGAGCCGTTTAATGCAACTGAGTACATTAATGAACTTCTGGGACTTCTCAAGATTAGTGAGGAACAAGTAAACCAGTGCTACAAAATCTTGCTGAAATCATTAGTTTGCGATGAAGGTGTTATTGACGGTCTTAACCAGAAGCACAAGCGTAGGCGCCTGTCTGGGCCGGGTAGCCCCGGAGGTTTCATTGATAGTTCTTTCAGTTGTGATTGCTCCAACGATTTGTGGGCCATGGCAACATCGTCGGTTTCGCATTCAGTGGAGCCTCTGTTTAAGAGGAGCAGAGCTAAGGACCAGCAAATGAGACTTCCTTCTGTTAGTCGCGTGTCTATTGATGTTCTTGATAGCCCTCGTTAA 1050 0.4829 MSPTTPSLLDTLLCQEEHEDTFENDDESPSFCPTKLQPFPRPVLHDNDLFWEPDELASLISKEEDTHADHDHRDGLRVGPVAWITNVCGHYGFSALTTVLAVNYFDRFVTSLTFQSDKPWMTQLTAVACLSLAAKMEETHVEESRFVFEAKTIQRMELLVLSTFKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLGVIADSRVMSYRPSTLAAATMIHVIKEIEPFNATEYINELLGLLKISEEQVNQCYKILLKSLVCDEGVIDGLNQKHKRRRLSGPGSPGGFIDSSFSCDCSNDLWAMATSSVSHSVEPLFKRSRAKDQQMRLPSVSRVSIDVLDSPR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60567g00007 349 SMART Cyclin_C_2 171 302 IPR004367 -
Stsc60567g00007 349 CDD CYCLIN_AtCycD-like_rpt2 171 261 - -
Stsc60567g00007 349 FunFam CYCLIN D32 170 259 - -
Stsc60567g00007 349 Gene3D - 75 169 - -
Stsc60567g00007 349 CDD CYCLIN_AtCycD-like_rpt1 81 166 - -
Stsc60567g00007 349 FunFam D6-type cyclin 64 169 - -
Stsc60567g00007 349 Pfam Cyclin, N-terminal domain 73 168 IPR006671 -
Stsc60567g00007 349 PANTHER CYCLINS 58 263 IPR039361 -
Stsc60567g00007 349 Pfam Cyclin, C-terminal domain 171 265 IPR004367 -
Stsc60567g00007 349 Gene3D - 170 259 - -
Stsc60567g00007 349 SMART cyclin_7 82 162 IPR013763 -
Stsc60567g00007 349 SUPERFAMILY Cyclin-like 51 169 IPR036915 -
Stsc60567g00007 349 SUPERFAMILY Cyclin-like 172 271 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60567g00007 Stsc-Chr60567 50381 52484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60567g00007 8 349 Core Cell Cycle Gene Families AT3G50070 47.500 1.06e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60567g00007 K14505 - gmx:100785030 470.314