Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60566g00005 ATGTCTGTCTCCCCAAAACACTCAGCTTGTAGTCTTCTTGACTTGCACTGCAATGAAGCAACAAGTGATGTTGTTTACTTGGATTTCAACATTCACAACAACAGCTATGAATCCAATGATACTGGTTCGGATAGTGCTCTTCTATGGAGTGACGACTCCAGTGTCGATGAAGAAGAACGTCTCTTGAGTTTGTTTGACTCTGAACATGATCATGTTAAGGAAAGAACAAGGTTGCTAGTTCAACTTCGCAAGAGTAAGTGGCTCCGGAATGCGCGAGAAGAAGCCATAAATTGGATCCTAAAGGTATGTGCATACTACAGTTTTAGACCAGAGACGGCATATGTTTCTGCGATTTATCTTGATCGTTTCCTTTTGTCTCGCACATTGAAGCAAGATAAAGCATGGCCTATGCAGCTGCTATCAGTAGCATGCTTGTCGCTAGCGGCGAAAATGGAGGAATCCAAGGTGCCTCTTCTGTTGGACCTGCAAATAGTGGAGTCAAGGTTCTTGTTTAAGCCGAAAACAGTTCAGAGGATGGAGCTTCTGGTTATGGCAACTCTCAAGTGGCGACTCAGAGTTATAGCGAAGCCTTTCGATTTTGCTCATCTTTTTATTGCTGGACTTTCCTATTCAGCTTCCACATTGTTGGGAGATTTAAATTATGTTGCTTCTCGTGTGTCTGATGTTATAATTAAAACATGTCTAGTTACGGATTTCTTGGAGATTTCACCTTCCACAATAGCAGCAGCTGCTCTGTTATGTGTAACAGATCAATATCTTGATGACCTTGAACTATATGGCTTCCACAAGAATATAAGAATTGATATGGTGCATAAATGTTACAAACTTATGAAGAAGACAATTCAGAGATCGGAGTTTTTTTTACCAAACACAACTACTCTTCAGTTAATGCCCCTAAGCCCAACTAGTGTGCTTGATCTTGCAGATTTGCAAGACAGTCACAGTGCTACTCAGAAATGA 981 0.4108 MSVSPKHSACSLLDLHCNEATSDVVYLDFNIHNNSYESNDTGSDSALLWSDDSSVDEEERLLSLFDSEHDHVKERTRLLVQLRKSKWLRNAREEAINWILKVCAYYSFRPETAYVSAIYLDRFLLSRTLKQDKAWPMQLLSVACLSLAAKMEESKVPLLLDLQIVESRFLFKPKTVQRMELLVMATLKWRLRVIAKPFDFAHLFIAGLSYSASTLLGDLNYVASRVSDVIIKTCLVTDFLEISPSTIAAAALLCVTDQYLDDLELYGFHKNIRIDMVHKCYKLMKKTIQRSEFFLPNTTTLQLMPLSPTSVLDLADLQDSHSATQK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60566g00005 326 CDD CYCLIN_AtCycD-like_rpt1 91 189 - -
Stsc60566g00005 326 CDD CYCLIN_AtCycD-like_rpt2 197 284 - -
Stsc60566g00005 326 Pfam Cyclin, N-terminal domain 68 191 IPR006671 -
Stsc60566g00005 326 PANTHER CYCLINS 64 290 IPR039361 -
Stsc60566g00005 326 SMART cyclin_7 97 185 IPR013763 -
Stsc60566g00005 326 Gene3D - 66 281 - -
Stsc60566g00005 326 FunFam D6-type cyclin 75 192 - -
Stsc60566g00005 326 Gene3D - 74 192 - -
Stsc60566g00005 326 SUPERFAMILY Cyclin-like 56 191 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60566g00005 Stsc-Chr60566 71958 73943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60566g00005 90 285 Core Cell Cycle Gene Families AT1G70210 44.828 2.33e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60566g00005 K18810 - gmx:100781193 361.688