Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60563g00003 ATGAAGGGCAGCGATCCTGAAAACCCTGAAGTGACAATAGATAGGAAAGCAGATGATGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATCCGTTTGTAGGTTCCCTCACGTTCGTTAGGGTGTATTCTGGAAAGCTATCTGCAGGCTCTTATGTACTCAATGCAAACAAGGGGAAAAAGGAGAGAATTGGCAGGCTTCTGGAAATGCATGCAAATAGCAGAGAGGATGTTAAAGTAGCTTTGACAGGTGATATTATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACGTTATCTGACCCGGAGAATCCGGTTGTGCTTGAGCGGATGGACTTCCCCGACCCCGTTATAAAGGTTGCGATTGAACCCAAAACTAAAGCCGATGTTGATAGGATGGCTGCTGGTTTAATCAAACTTGCACAGGAAGACCCTTCTTTCCACTTCTCCAGGGACGAAGAGATTAACCAGACAGTGATTGAAGGAATGGGAGAATTACATCTCGAAATCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTTGAAGCCAATGTTGGTGCTCCCCAAGTGAACTACAGGGAAAGCATTTCCAAAATCTCGGAAGTAAAATATGTGCACAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACGGTTCGGTTTGAACCCATGGACCCAGGGAGTGGATACGAATTCAAGAGTGAAATAAAGGGAGGAGCTGTACCGAAGGAGTACGTTCCAGGGGTCATCAAAGGATTGGAAGAGTGCATGACCAATGGTGTTCTTGCTGGCTTCCCAGTTGTTGATGTACGAGCAGTGCTTGTAGATGGTTCTTACCACGATGTAGATTCAAGTGTGCTGGCATTCCAGCTTGCAGCAAGAGGAGCCTTCCGGGAAGGAATGAGAAAAGCCGGGCCAAGGATGCTTGAACCTATAATGAAAGTAGAAGTTGTTACTCCTGAAGAACATTTGGGTGATGTAATCGGTGATCTCAACTCGAGAAGAGGTCAGATCAACAGCTTTGGTGACAAACCAGGTGGCCTTAAGGTTGTGGATGCCTTAGTTCCTCTTGCTGAGATGTTTCAATATGTGAGCACACTGAGAGGAATGACAAAGGGACGTGCGTCTTACACAATGCAATTAGCCATGTTTGATGTGGTGCCACAGCACATTCAGAACCAACTTGCCACAAAGGAGCAAGAAGTTGCTGCTTAA 1233 0.4493 MKGSDPENPEVTIDRKADDDEPFSGLAFKIMSDPFVGSLTFVRVYSGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLSDPENPVVLERMDFPDPVIKVAIEPKTKADVDRMAAGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKISEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPKEYVPGVIKGLEECMTNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLATKEQEVAA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60563g00003 410 SUPERFAMILY Translation proteins 3 115 IPR009000 -
Stsc60563g00003 410 FunFam Elongation factor G 317 388 - -
Stsc60563g00003 410 SUPERFAMILY EF-G C-terminal domain-like 316 405 IPR035647 -
Stsc60563g00003 410 CDD EFG_III 118 193 IPR009022 -
Stsc60563g00003 410 Gene3D - 317 388 - -
Stsc60563g00003 410 SMART EFG_C_a 313 401 IPR000640 -
Stsc60563g00003 410 SMART EFG_IV_2 193 311 IPR005517 GO:0005525
Stsc60563g00003 410 CDD EFG_mtEFG1_IV 196 311 IPR005517 GO:0005525
Stsc60563g00003 410 FunFam Elongation factor G 121 197 - -
Stsc60563g00003 410 Gene3D - 198 401 IPR014721 -
Stsc60563g00003 410 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 15 406 - -
Stsc60563g00003 410 SUPERFAMILY Ribosomal protein S5 domain 2-like 192 312 IPR020568 -
Stsc60563g00003 410 CDD EFG_mtEFG_C 316 394 IPR035649 -
Stsc60563g00003 410 Pfam Elongation factor G, domain IV 192 310 IPR005517 GO:0005525
Stsc60563g00003 410 Gene3D Elongation Factor G (Translational Gtpase), domain 3 120 197 - -
Stsc60563g00003 410 CDD EFG_mtEFG_II 23 105 - -
Stsc60563g00003 410 FunFam Elongation factor G 198 328 - -
Stsc60563g00003 410 Pfam Elongation factor Tu domain 2 37 103 IPR004161 GO:0005525
Stsc60563g00003 410 Gene3D Translation factors 1 119 - -
Stsc60563g00003 410 FunFam Elongation factor G 5 120 - -
Stsc60563g00003 410 Pfam Elongation Factor G, domain III 117 190 IPR041095 -
Stsc60563g00003 410 Pfam Elongation factor G C-terminus 314 400 IPR000640 -
Stsc60563g00003 410 SUPERFAMILY EF-G C-terminal domain-like 117 194 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60563g00003 Stsc-Chr60563 25710 27863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60563g00003 39 381 Eukaryotic Initiation Factors Gene Family AT1G56070 26.536 1.98e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60563g00003 K02355 - gmx:102663021 778.089