Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60562g00006 ATGGCTCCAAGGGACAGAGCAACCGCACTTAACGGACCCAACCTGACCGTACACACCGCCAAAGAGATCCGTTACAGAGGCGTTAGGAAACGGCCATGGGGCCGTTACGCCGCCGAGATCCGAGACCCTGGCAAGAAGACGCGCGTCTGGCTCGGAACTTTTGACACCGCAGAGGAGGCGGCGCGTGCCTACGACGCCGCTGCTAGGGAGTTCCGCGGCGCTAAGGCGAAGACCAATTTTCCGACTCCGGCGGAGCTTCTCAACAACAACAGCTTCGTTAACGTTAACAGCAACGGCAACGCGCGTAGCCCTAGCCAGAGTAGCACGCTTGATTCGTCTTCTCCGTCGCCGCTGGCACTGCCGGCGCAGACACAGCCGCAGCTGGAACTGACGCTGAAGCCGTTTTCGTCGGGCGGCGTGATGGCGTTCCCGGCGGCGCCTCCTGTTATGTTCTTTGACGCGTTCGCGCGTGCGGCGGAGAACGTGAGCCGGCGCGAGATGTGTTTCATTGGTGGCGCGTGCAGCGACTCCGATTCTTCGTCGGTGGTGGACTACGAGGGCGTGCCACGTAAGGGACTGTTGAATCTGGACCTCAACATGGCTCCACCTCCTGAGGTCGCTTGA 624 0.6138 MAPRDRATALNGPNLTVHTAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPAELLNNNSFVNVNSNGNARSPSQSSTLDSSSPSPLALPAQTQPQLELTLKPFSSGGVMAFPAAPPVMFFDAFARAAENVSRREMCFIGGACSDSDSSSVVDYEGVPRKGLLNLDLNMAPPPEVA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60562g00006 207 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Stsc60562g00006 207 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Stsc60562g00006 207 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Stsc60562g00006 207 MobiDBLite consensus disorder prediction 80 124 - -
Stsc60562g00006 207 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Stsc60562g00006 207 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc60562g00006 207 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Stsc60562g00006 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 200 - -
Stsc60562g00006 207 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Stsc60562g00006 207 MobiDBLite consensus disorder prediction 82 124 - -
Stsc60562g00006 207 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Stsc60562g00006 207 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60562g00006 Stsc-Chr60562 50167 51605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60562g00006 14 153 AP2-EREBP Transcription Factor Family AT3G15210 65.278 1.47e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60562g00006 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60562g00006 K09286 - zju:107432572 200.675