Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60562g00003 ATGGAAAGCTTCTACCACCACCACCACCACTTCGACAACAGTGACACTCACTTGCCACCTGGCTTCCGATTCCACCCCACCGATGAAGAACTCATCACCTACTACCTCGTCAAGAAGGTTCTCGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCAAAGATGGGTGAGAAAGAATGGTACTTCTTCAGCTTGAGGGACAGGAAGTACCCAACAGGGTTAAGAACAAACAGAGCCACTGAAGCTGGGTACTGGAAAGCCACTGGCAAAGACAGAGAGATCTACAGCTCCAAGACATGTTCTCTTGTTGGCATGAAGAAGACACTTGTCTTCTACAGAGGAAGAGCTCCAAAGGGTGAGAAGAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTATCTCTCTAGAACCTCCAAGGATGAGTGGGTGATATCTCGTGTGTTCCAGAAGACAACCACCGGAGGCGGCGGTGGTGGCGGCGGATCCGCCGTGTCAACCACCGCCGGAGGTTCAAAGAAGGCAAAAATGAGCACTTCAACCACCACTTCTACAATGAGCTTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTACCTTCCACCGCTTCTTGACTCTTCACCTTACACCACCGCCACCACCGGGTCCGTCACCTCCGCCGCCGCACCATACGACGGCGGCCGCCAGAGCTCCTTCGAAAACAACAATGAAACCACAAGGGAGCACGTGTCCTGTTTCTCCACAATCACCAACAACTTCGTCAATGGGTTCTTCGATCTTGCTCCCATGGATTCCTTCGCTCGATTCCAAAGAAACAACAACAACAACAACGTTGGTGTTTCTGCATTCCCAAGCCTAAGGTCCCTGCAAGATAACCTTCAACTTAACCCCTTGTTTTTCTCCTCCGCCGCCGCGGTGCCGCCGTTCCATGGCGGCGAGTTTCACACCGGCGGGACCTGGCCGGTGCCGGAGGATCAAAGGGTGTCTGAAACTGCTGCCGCCGGCATGGCTTTGGGACATTCCGAGCTGGATTGCATGTGGGGCTATTGA 1107 0.5303 MESFYHHHHHFDNSDTHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRTSKDEWVISRVFQKTTTGGGGGGGGSAVSTTAGGSKKAKMSTSTTTSTMSFCPEPSSPSSVYLPPLLDSSPYTTATTGSVTSAAAPYDGGRQSSFENNNETTREHVSCFSTITNNFVNGFFDLAPMDSFARFQRNNNNNNVGVSAFPSLRSLQDNLQLNPLFFSSAAAVPPFHGGEFHTGGTWPVPEDQRVSETAAAGMALGHSELDCMWGY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60562g00003 368 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Stsc60562g00003 368 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Stsc60562g00003 368 FunFam NAC domain-containing protein 100-like 27 174 - -
Stsc60562g00003 368 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
Stsc60562g00003 368 SUPERFAMILY NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
Stsc60562g00003 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 252 - -
Stsc60562g00003 368 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60562g00003 Stsc-Chr60562 30117 31953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60562g00003 1 368 NAC Transcription Factor Family AT5G53950 51.777 1.28e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60562g00003 NAM 9.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60562g00003 - - gmx:100788671 461.455