Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60562g00001 ATGGCGGATATAGCAGGTTTAATTGAGGCAGCAGGATCAAGGTTCAGTGCATTGGAGCTTATTGGGCAGGGATCATTTGGTGATGTCTATAAAGGGTTTGACAGAGAGCTCAACAAAGAAGTCGCTATCAAAGTAATTGATTTGGAAGAATCGGAGGATGAAATTGATGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGCCGATCTCCATACATCACTGAGTACTACGGTTCCTATCTCAATCAAACTAAACTCTGGATAATAATGGAATACATGGCTGGCGGCTCTGTTGCTGATCTACTTCAATCTGGTCCCCCACTTGATGAAACCTCCATTGCTTGCATTCTACGAGACTTGCTACATGCAATTGATTACCTACACACTGAAGGAAAAATTCATAGAGACATCAAAGCTGCAAACATTTTATTGACCGAGAATGGTGACGTCAAGGTTGCAGATTTTGGTGTTTCTGCACAGCTTACAAGGACCATATCAAGAAGAAAGACATTTGTAGGAACACCTTTCTGGATGGCACCAGAGGTTATTCAGAATTCCGAAGGATATAATGAGAAGGCAGATATCTGGTCTATGGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCACCACTTGCTGATCTTCACCCCATGAGAGTGCTTTTTATTATACCTCGAGAGAATCCTCCGCAGTTGGATGAGCATTTTTCTCGTCCCCTGAAAGAGTTTGTATCATTGTGTTTGAAGAAGTTTCCGGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTCTTATTCGGAATGCTAGGAAGAGTCCAAAGCTTGCAGAAAGAATAAGGGAGCGTCCAAAGTACCACATCAAGGAAGATCTGGGGGCTGATGATCAGGGGACGGTTAAAAAAGTGCCAAGAGGGATTGGTGAGGCTTCTGATACTATGAAGGTGTCTAGAGATTCTAAAGCTGAAGAAACTAGTAGAACCAGTGGTCAGGGTCAAACTGTGAAAAGTGCTGGATGGGACTTCAACATTGGAGGCACTGTTCGTAGTGGCACTGTTCGTAGTGTAGCACGACCACCTGTTTCACAAAATCAGGCTACCCAAAGAAAAGCTCCAGAGAGTGGCTATCAAGGCGGAACTGTCAGTAGAAGTGCACTAAATGAGTCAGTTGAAAGTTCACTTGGAAAAGATCATAGAGTTACCTATCATGATGAGGATCCGGATGATCAGCTTGATGATGATGAAGGAAATGGATCAGGAACTGTTGTTATTCGATCTCCGAAAGCATCAAGGCCATCAGTATTTCGTGGCCAAAGCTCCCAGTCTAGCAGCAGCTATGCTTCTCTTGAAGATGCTTCTACGAGTGGAACTGTTGTCTTGCGTAACCAGCACGATGATTCTGATTCTTCACAAACACCTAGGTCCCGCATGGGACTTAACGACAGAAATTCCGTTACTTCACTGGAAGATAGTGCTGCAAATCTTGCCGAGGCAAAGGCTGCTATCCTGAGGAAAGCAAATGCTAAAGAGAGAAAATTCAACAATTTACAAGAAAGCAAGAGAGACCAAATGGCAAGCAGTTCTGATTCTTCAAGATCACATCATGAATACCATGATGCACTAAAGGGCATGTCAAGATCACAATATGCCAGTGATGATGAAGAGAGTGCTAAAGTTATGTCGTCCTCTGTGCCGTTATCAGTTTTGCTTGTTCCTTCTCTAAAAGAGACCATTGCTAATGATCCAGAGGGGGCAATCGTGCGAGCGGTTATCAGTTCTCTCATAAACATGGAGAGCACGAAGCCAAGATCCTGCGATGTTCTCGTCAGAAAGTTGCTTCAGCGGTTGGCGAGTTCAAAGGAAGATTCATTGAAGGACCTGCAGGAACTAGCAGGCCAACTATTCAGCAAGACCAAGGGAACCGGAGACAGTCGAAACTCTGAAGCCGAAAGCCGGAGGAAACAACAGAACAAGGACATCCATCAAAATAGCAATTTGAGCCCACTAGCCAGATTTCTTCTCTCAAGATGGCAGGGTCAAAGCTCACGTGATTTAAATCAATCTTGA 2067 0.4403 MADIAGLIEAAGSRFSALELIGQGSFGDVYKGFDRELNKEVAIKVIDLEESEDEIDDIQKEISVLSQCRSPYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDETSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSMGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPLKEFVSLCLKKFPAERPSAKELLKHRLIRNARKSPKLAERIRERPKYHIKEDLGADDQGTVKKVPRGIGEASDTMKVSRDSKAEETSRTSGQGQTVKSAGWDFNIGGTVRSGTVRSVARPPVSQNQATQRKAPESGYQGGTVSRSALNESVESSLGKDHRVTYHDEDPDDQLDDDEGNGSGTVVIRSPKASRPSVFRGQSSQSSSSYASLEDASTSGTVVLRNQHDDSDSSQTPRSRMGLNDRNSVTSLEDSAANLAEAKAAILRKANAKERKFNNLQESKRDQMASSSDSSRSHHEYHDALKGMSRSQYASDDEESAKVMSSSVPLSVLLVPSLKETIANDPEGAIVRAVISSLINMESTKPRSCDVLVRKLLQRLASSKEDSLKDLQELAGQLFSKTKGTGDSRNSEAESRRKQQNKDIHQNSNLSPLARFLLSRWQGQSSRDLNQS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 392 406 - -
Stsc60562g00001 688 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 637 - -
Stsc60562g00001 688 CDD STKc_MST3_like 13 286 - -
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 289 484 - -
Stsc60562g00001 688 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 643 659 - -
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 525 553 - -
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 635 662 - -
Stsc60562g00001 688 Coils Coil 610 630 - -
Stsc60562g00001 688 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 356 391 - -
Stsc60562g00001 688 SUPERFAMILY Protein kinase-like (PK-like) 12 287 IPR011009 -
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 512 556 - -
Stsc60562g00001 688 Pfam Protein kinase domain 16 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 326 340 - -
Stsc60562g00001 688 Coils Coil 41 68 - -
Stsc60562g00001 688 Gene3D Transferase(Phosphotransferase) domain 1 12 305 - -
Stsc60562g00001 688 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60562g00001 688 FunFam serine/threonine-protein kinase dst1 isoform X1 12 301 - -
Stsc60562g00001 688 MobiDBLite consensus disorder prediction 432 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60562g00001 Stsc-Chr60562 8293 15638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60562g00001 1 685 MAP Kinase Kinase Kinase Kinase AT3G15220 62.731 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Stsc60562g00001 Pkinase 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60562g00001 K08838 - gmx:100815042 1026.54