Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60561g00011 ATGGGAGATAATAACAATGTGAACCTTCCACCGGGGTTTCGATTTTATCCTACAGACGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGATCTCTATCCTTATGATCCTTGGCAACTTGATGGTATCGCTTTGGGAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGACACAGAATAGGGTTACTGAGAATGGTTATTGGAAAGCAACAGGAATGGAAGAACCAGTGATCACAAGCTCAAGCAACAAGAGAGTTGGCATCAAGAAATTCTTTGTGTTCCATCTTGGTGATGAAGCCACTTCTGCTATCAAAACAAATTGGATAATGCAAGAATATTGCCTTTCAGATTTTTCTACTTCCTCCTCTAGCAGCAGATCATCCAAGAGAAAATCACAGTCAAAAACAGATTACAGTAAATGGGTGATATGTCGTGTTTATGAGCGGAATGGAGATGATGATGATGATGGAACAGAGCTGTCTTGTTTGGATGAAGTTTTCCTGTCGCTCGATGATCTTGATGAAATAAGCTTACCACAAATTAAATTAGAAGATGATGCTCGGTTTGGTAATGCTGTGGCTCTCAAAAAGCGGCTAAGCTCTTTGTGCTCTCAAAAAGCAGCTGATGGAGAATCACATGATGATCCCAGAGCCAGCTTTAAAAAGCTATTCTTGAGGGCTCTCAAAAGCACCCCCGGCTCTCAAAAGCCAGGAGCAAGAGCTCCTTGGATTTTTGAGTTACCAAACGCAAAAAGGTGGCTCCTGCTTTTTGAGAGCAGGAGCACTTGGTCGAAAAATTTTACCAAATCCACCCTTATTGGCTCCCTATGGGTCTCTTAA 882 0.4274 MGDNNNVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWQLDGIALGEGKQWYYYSRRTQNRVTENGYWKATGMEEPVITSSSNKRVGIKKFFVFHLGDEATSAIKTNWIMQEYCLSDFSTSSSSSRSSKRKSQSKTDYSKWVICRVYERNGDDDDDGTELSCLDEVFLSLDDLDEISLPQIKLEDDARFGNAVALKKRLSSLCSQKAADGESHDDPRASFKKLFLRALKSTPGSQKPGARAPWIFELPNAKRWLLLFESRSTWSKNFTKSTLIGSLWVS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60561g00011 293 SUPERFAMILY NAC domain 6 162 IPR036093 GO:0003677|GO:0006355
Stsc60561g00011 293 FunFam NAC domain-containing protein 104 18 166 - -
Stsc60561g00011 293 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Stsc60561g00011 293 Pfam No apical meristem (NAM) protein 10 129 IPR003441 GO:0003677|GO:0006355
Stsc60561g00011 293 ProSiteProfiles NAC domain profile. 9 163 IPR003441 GO:0003677|GO:0006355
Stsc60561g00011 293 PANTHER NAC TRANSCRIPTION FACTOR 56 9 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60561g00011 Stsc-Chr60561 61560 67442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60561g00011 7 193 NAC Transcription Factor Family AT1G01720 40.609 1.09e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60561g00011 NAM 6.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60561g00011 - - qsa:O6P43_012298 319.316