Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60561g00010 | ATGAACGACCTCATGACCAAGTCCTTCACCAGCTATGTCGATCTCAAGAAAGCCGCCTTGAAAGATGAATTGGACTTAGAAGCAGGCCAGGGCGTTGAGCTCAGATCTTCCACCACGCACATGGACACCGACATGGGCCTCTTCTTGGACGAAGCCGAGAAGGTCAAGGCTGAGATGGCCGCCCTGCGAGATATACTCGCAAGGCTCCAACAGGCCAACGAAGAGGGCAAATCGCTCCACAAGCCCGACGCTCTCAAATCCCTAAGAACCAGAATCAACTCTGACGTTGTCATGCTTCTCAAGAAGACCCGGGCTATTAAGGCCCATCTTGAAGACATGGACAAAGCCAATTCCGCTAACAGGAGGCTCTCCGGCCTCAAGGACGGCACCACAACCGCCATCTACCGCACTCGGATCGCCGTCACGAACGGACTCCGGAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGACACCGTCGGAAGAAGGTACTTCACGGTTACCGGCGAGTACCCCGACGAGGAGGTGATAGAGAAGATCATTTCGAGCGGCGAAGAGGAGGAGTTCTTGGGGAAGGCGATTCGAGAGCATGGGAGGGGGAAAGTGATGGAAACTGTGGTTGAGATTCAGGATAGGCATGACGCGGCGAAAGAGATCGAGAAGAGCTTGCTTGAGTTGCATCAGGTGTTCTTGGACATGGCGGTTATGGTGGAGGCTCAAGGGGAGAAGATGGATGACATTGAACACCATGTGATCCATGCTTCTCACTATGTTAAGGATGCTAACAAAGAGCTTGTAACCGCTAGAAAGTATCAGAGGAACAGCAGGAAGTGGCTCTGCGTTGGGATCATCATCCTTCTTATCCTCATCCTTGTTATTGTGATTCCCATCGCCACCAGTCTCAGAAGCTCTTGA | 948 | 0.5264 | MNDLMTKSFTSYVDLKKAALKDELDLEAGQGVELRSSTTHMDTDMGLFLDEAEKVKAEMAALRDILARLQQANEEGKSLHKPDALKSLRTRINSDVVMLLKKTRAIKAHLEDMDKANSANRRLSGLKDGTTTAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPDEEVIEKIISSGEEEEFLGKAIREHGRGKVMETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVIHASHYVKDANKELVTARKYQRNSRKWLCVGIIILLILILVIVIPIATSLRSS | 315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60561g00010 | 315 | Pfam | Syntaxin | 48 | 252 | IPR006011 | GO:0016020 | |
| Stsc60561g00010 | 315 | SMART | tSNARE_6 | 212 | 279 | IPR000727 | - | |
| Stsc60561g00010 | 315 | CDD | SynN | 45 | 198 | IPR006011 | GO:0016020 | |
| Stsc60561g00010 | 315 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 217 | 279 | IPR000727 | - | |
| Stsc60561g00010 | 315 | PANTHER | SYNTAXIN | 57 | 298 | IPR045242 | - | |
| Stsc60561g00010 | 315 | SMART | SynN_4 | 40 | 168 | IPR006011 | GO:0016020 | |
| Stsc60561g00010 | 315 | Gene3D | - | 40 | 171 | - | - | |
| Stsc60561g00010 | 315 | Coils | Coil | 52 | 75 | - | - | |
| Stsc60561g00010 | 315 | FunFam | Syntaxin 132 | 210 | 310 | - | - | |
| Stsc60561g00010 | 315 | CDD | SNARE_syntaxin1-like | 216 | 278 | - | - | |
| Stsc60561g00010 | 315 | ProSitePatterns | Syntaxin / epimorphin family signature. | 223 | 263 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Stsc60561g00010 | 315 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 42 | 174 | - | - | |
| Stsc60561g00010 | 315 | SUPERFAMILY | t-snare proteins | 43 | 272 | IPR010989 | GO:0016020|GO:0016192 | |
| Stsc60561g00010 | 315 | Coils | Coil | 142 | 162 | - | - | |
| Stsc60561g00010 | 315 | Pfam | SNARE domain | 254 | 305 | IPR000727 | - | |
| Stsc60561g00010 | 315 | Gene3D | - | 212 | 312 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60561g00010 | Stsc-Chr60561 | 56572 | 57845 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60561g00010 | 1 | 291 | SNARE and Associated Proteins | AT1G08560 | 64.068 | 2.50e-132 | 377 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60561g00010 | K08486 | - | gmx:100816016 | 485.337 |