Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60560g00020 ATGGATTTTTGGCCAGAATTTATTGCTAGCAATTCCGGTAAAGAATTTGTAGCTGGAGGCATTGGTGGCACTGCCGGTATAATCTCCGGTTACCCGTTGGACACCCTCCGAATCTTGCAGCAGCAGAATTCAAGAACCGGCTCCGCCATCACCATCCTTCGAAACATGGTTGCCAAGGATGGACCAACTTCCCTCTACCGCGGCATGGCTGCACCTTTGGCTTCTGTCACTTTTCAGAACGCAGTGGTTTTCCAAAGTTATGCAGTACTTTCAAGAGCATTTTGCTCATCAGTTTCTCTTAAGGACCCTCCTTCCCTTAAGGGTGTTGCTTTAGGAGGAGTTGGCACCGGTGCTCTCCAAAGCATATTGCTTTCCCCTATTGAGTTGGTTAAAATTCGCCTTCAGTTGTCTGAATCTGAGAAAGGTCCCATAAAGGTGGCTAAGAACATATTGAAAACTGAGGGCTTCTGCGGAATTTACAGAGGACTCAGCATAACTATGTTGAGAGATGCACCTGCATATGGTTTGTACTTCTGGACATATGAATATGCAAGGGAACTACTTCACCCTGGTTGCAGAAAAAGTTCTGAAGAAAGCTTGAATACTATGTTAGTATCAGGGGGATTAGCTGGGGTATCTAGCTGGATTTTCAGCTACCCTTTAGATGTTATAAAGACAAGAATCCAGTCTCAAACACCTCATTGTTCTAAATACAATGGCATCCTAGATTGTCTCCAAAAGAGCATAAAAGAAGAAGGCTATTTTGTGTTGTGGCGAGGTTTAGGAACAGCTGTTGCTAGAGCTTTCATAGTGAATGGTGCTGTGTTTTCAGCTTATGAGATTACTCTTAGGTGCTTCTTTAGTAGTAATTGA 873 0.4364 MDFWPEFIASNSGKEFVAGGIGGTAGIISGYPLDTLRILQQQNSRTGSAITILRNMVAKDGPTSLYRGMAAPLASVTFQNAVVFQSYAVLSRAFCSSVSLKDPPSLKGVALGGVGTGALQSILLSPIELVKIRLQLSESEKGPIKVAKNILKTEGFCGIYRGLSITMLRDAPAYGLYFWTYEYARELLHPGCRKSSEESLNTMLVSGGLAGVSSWIFSYPLDVIKTRIQSQTPHCSKYNGILDCLQKSIKEEGYFVLWRGLGTAVARAFIVNGAVFSAYEITLRCFFSSN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60560g00020 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 93 IPR018108 -
Stsc60560g00020 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 187 IPR018108 -
Stsc60560g00020 290 SUPERFAMILY Mitochondrial carrier 13 280 IPR023395 -
Stsc60560g00020 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 285 IPR018108 -
Stsc60560g00020 290 Pfam Mitochondrial carrier protein 13 95 IPR018108 -
Stsc60560g00020 290 Pfam Mitochondrial carrier protein 202 288 IPR018108 -
Stsc60560g00020 290 Pfam Mitochondrial carrier protein 111 189 IPR018108 -
Stsc60560g00020 290 Gene3D Mitochondrial carrier domain 13 289 IPR023395 -
Stsc60560g00020 290 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 286 - -
Stsc60560g00020 290 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Stsc60560g00020 290 PRINTS Mitochondrial carrier protein signature 160 178 IPR002067 GO:0055085
Stsc60560g00020 290 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Stsc60560g00020 290 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Stsc60560g00020 290 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60560g00020 Stsc-Chr60560 82135 83183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60560g00020 1 290 Antiporters AT1G79900 68.966 3.53e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60560g00020 K15109 - gmx:100812034 446.432