Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60560g00009 ATGGATGGCATTGATGATGATGCAAGGTATCCGCCTAACCGTTATGGCGATAGTCGTAGCCATGTTTATGATTATCAGGATAATCAGGAACTTGATATGAGGGATTCTTCATATTCTCAGCCAGTTCCAAATGAATTTCCACAAGATAATAATGATGTGGATGAAGAAGATGATGAGCAGTTAGGAGAGGGTGAAGATGATGGTATAGATCAAAGAAACGGTTTTCAGATTCCCAAAAAGGATGCTGATGACAATGATGAAGGGGAAGGTGATATAGATGGAGATGATGATGAAGATGGGCATGATCATGATGATAACATTGATGAAGGTAATAATGATAACAAGAAAATTCGGAACAATTTTCGGCTTTCCCAGAAGGATGACAATGATGATGAGGAAGGTGACACAGACGGGGATGGCAACGATTATGATGATAACAATAATGAAGGTAATGATGACAATGATAACAGTCATGCCACTAAGATTGAAGATGGTTTGGAGTTGCACCCAAAAAAGCAAAAGCTGAAGAGTTTGGTTTCTGCCTATGAACTTGCAGCTCGGGTGCCAGCACCATCAACTGCGGCTACCTCAGCTCCTAAACCATCTTCAGGTGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACGTTTGTTCTTCTTGATGCTTGGGGTGATCGGTTTCTTCAACATGAAAGGAAGAGTCTTCGCTCTGATGAATGGCATGAAGTTGCAGAAGAAGTATCAAAGATTTCAAAAGTTGATAGGACGAATACCCAGTGTAGAAATCGTATTGATACATTGAAGAAAAAATACAAAAAGGAGATGATGAAGTTTCCTGCAACGGGTGTTGGAAGTAGCAAATGGCTTTACTTCGAAAGGATGAATAAGCTTATGTCTCCTCCACCACAACAAACAAGTCTCCCTTGTGAAATGCAATCACAAAAGCACGCCGCCATTAACTCAAGAGTTAATTTGAACCTTGCAAATGGAGTAGATAAGATGAAGAATAGCCCTGAGACTACAGAATCTACTAGCGAAGATGGTTCGCCTGGGCCTCGTGCAAAGAAAAGGAAGAAAAGAAGGTGCAATGACAACGCTTGTTCATTCAGATTGCTAGCTGATTCCATTCATAAGTTCAGTAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGCAGATGGTGGAGCTGGAGAAGATGAGGATGGATTTGCATAAGGAATTGGAGACACAGAAGAGGCAGATTCTGGAGAGAGTACAGAGTAAGATTTGGAAACTAGAGCAGGGAGATGACGAGAACGATGATTCTGCTGAGAATGGTATGTGA 1329 0.4101 MDGIDDDARYPPNRYGDSRSHVYDYQDNQELDMRDSSYSQPVPNEFPQDNNDVDEEDDEQLGEGEDDGIDQRNGFQIPKKDADDNDEGEGDIDGDDDEDGHDHDDNIDEGNNDNKKIRNNFRLSQKDDNDDEEGDTDGDGNDYDDNNNEGNDDNDNSHATKIEDGLELHPKKQKLKSLVSAYELAARVPAPSTAATSAPKPSSGGRNSLTDWTEHETFVLLDAWGDRFLQHERKSLRSDEWHEVAEEVSKISKVDRTNTQCRNRIDTLKKKYKKEMMKFPATGVGSSKWLYFERMNKLMSPPPQQTSLPCEMQSQKHAAINSRVNLNLANGVDKMKNSPETTESTSEDGSPGPRAKKRKKRRCNDNACSFRLLADSIHKFSKIYEKIENSKRQQMVELEKMRMDLHKELETQKRQILERVQSKIWKLEQGDDENDDSAENGM 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 49 65 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 330 363 - -
Stsc60560g00009 442 FunFam trihelix transcription factor ASIL2 212 274 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 32 47 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 151 171 - -
Stsc60560g00009 442 Coils Coil 384 415 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 66 85 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 1 31 - -
Stsc60560g00009 442 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 197 431 IPR044823 -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 130 150 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 86 104 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 1 171 - -
Stsc60560g00009 442 Gene3D - 212 274 - -
Stsc60560g00009 442 ProSiteProfiles Myb-like domain profile. 212 269 IPR001005 -
Stsc60560g00009 442 Pfam Myb/SANT-like DNA-binding domain 211 298 IPR044822 -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 105 129 - -
Stsc60560g00009 442 MobiDBLite consensus disorder prediction 330 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60560g00009 Stsc-Chr60560 36066 37806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60560g00009 346 429 Trihelix Transcription Factor Family AT3G14180 40.000 5.76e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc60560g00009 Myb_DNA-bind_4 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60560g00009 - - ahf:112703693 639.802