LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60558g00010	ATGGAAGAAGAAGCACTTACAGTTACAGTGAAGCAAGAACAGGAATCAGAACAACCGCAAGCGCAAGCACAACCGAGGGAAGGGTTGAACGAGGCTGGTCCACCTCCCTTCCTTACCAAGACTTTCGATATGGTTGATGACTCTTCCATTGACTCCATTGTTTCTTGGAGCGTTGCTCGCAACTCCTTCGTTGTTTGGGACCCTCACAAGTTCTCCACTACCATCTTGCCTCGCTACTTCAAGCATTCCAACTTCTCTAGCTTCATTCGCCAGCTCAACACTTATGGATTTCGAAAAGTTGATCCTGATCGGTGGGAATTTGCTAACGAAGGTTTCTTGGCGGGACAGAAGCACTTGTTGAAGACCATAAAGAGAAGAAGAAATGTATTGCAGGGAACACAGCAAAGCCAAAGAGGAGGTGGAGGTCCTTGTGTTGAGTTGGGGGAGTATGGTTTAGAAGGTGAGGTTGAAAGGTTGGTGAGAGACCGGAACGTGTTGATGGCCGAAATAGTGAAGTTGAGGCAGCAACAGCAGAACTCACGAAATGAAGTGCTTGCGATGGAGGCAAGGTTGCAAGCCACAGAGAACAAGCAGCAACAGATGATGACTTTCCTTGCCAAAGCGATTAACAATCCATCTTTCATGCAGCATTTAGCTCACAAGAATTCCCAGAACCCGCAATTGTTTGGCGTCGAAGTTAAGAGGAAGAGGAGACTAACCACTAGCCCAATTGCGGATCCAGTGCCAGCAGTAGCAGCAGTGCCTATTGAATCAGTAGCGGAGGACAATCCAAACCCTGAACAAGAACTTGCAAATATCGAGTATGAGATGGACACATTTTTCGCAACATCTTATGATACTGAGCCTAACTGCGAAATTAATGACCCTTTATCAACAACTTCAGCATACGGGGATACAATCTTGGAGGATTTTCTCAAGGAAGATTTGGTTACTGGGAATCCAAAGGATGAAGTTGTGATTGGTGATTGTTCAATTGATATTCCCGTGGAGGATTTGGTTGCAAAGCCTAAGGATTGGACTGAGGAATTGCAGGACCTTGTGGATCATATGGGATATCTTGGTTCCAAACCTCAGTGGAATATGGAATCATGA	1113	0.4564	MEEEALTVTVKQEQESEQPQAQAQPREGLNEAGPPPFLTKTFDMVDDSSIDSIVSWSVARNSFVVWDPHKFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVLQGTQQSQRGGGGPCVELGEYGLEGEVERLVRDRNVLMAEIVKLRQQQQNSRNEVLAMEARLQATENKQQQMMTFLAKAINNPSFMQHLAHKNSQNPQLFGVEVKRKRRLTTSPIADPVPAVAAVPIESVAEDNPNPEQELANIEYEMDTFFATSYDTEPNCEINDPLSTTSAYGDTILEDFLKEDLVTGNPKDEVVIGDCSIDIPVEDLVAKPKDWTEELQDLVDHMGYLGSKPQWNMES	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60558g00010	370	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	23	253	IPR027725	-
	Stsc60558g00010	370	MobiDBLite	consensus disorder prediction	11	25	-	-
	Stsc60558g00010	370	Coils	Coil	156	197	-	-
	Stsc60558g00010	370	SMART	hsfneu3	33	126	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60558g00010	370	FunFam	Heat shock transcription factor 1	30	127	-	-
	Stsc60558g00010	370	ProSitePatterns	HSF-type DNA-binding domain signature.	76	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60558g00010	370	Gene3D	-	30	127	IPR036388	-
	Stsc60558g00010	370	SUPERFAMILY	"Winged helix" DNA-binding domain	33	126	IPR036390	-
	Stsc60558g00010	370	PRINTS	Heat shock factor (HSF) domain signature	75	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60558g00010	370	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60558g00010	370	PRINTS	Heat shock factor (HSF) domain signature	37	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60558g00010	370	MobiDBLite	consensus disorder prediction	1	35	-	-
	Stsc60558g00010	370	Pfam	HSF-type DNA-binding	37	126	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60558g00010	Stsc-Chr60558	88361	91203	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60558g00010	24	364	HSF	AT2G26150	54.227	1.14e-127	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Stsc60558g00010		HSF_DNA-bind	6.9e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60558g00010	K09419		-	gmx:100820298	444.506