Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60558g00009 ATGCTAGGGTTAATAGCAGGGTTTGTGTGTTACTTTTATGGGCCCTATTGGAGGCTTAGAAGAGTTCCGGGCCCACCATCCCTTCCTCTTGTAGGACACCTTCCATTCCTGGCTAAGTATGGCCCTGATGTCTTCTCTGTCCTTGCTAAGGAATATGGCCCAATTTACAGATTTCATATGGGAAGACAGCCACTAATAATAGTAGCAGATGCAGAGCTTTGTGCTGAAGTTGGAATAAGAAAGTTCAAACAAATTCCAAACAGAAGCATTCCTTCTCCTATTTCTGCTTCCCCTCTTCACCAAAAAGGTCTCTTCTTCACTAGGGGTCAACGCTGGTCAACCATGAGAAACACCATAATCTCAATGTACCAACCATCACACTTAGCCAGCTTAATTCCAACAATGCAATCATTCATAGAATCATCAACACAAAACCTTGATCAAATCACAAACACTAATGAAGACATAACATTCTCCAATCTCTCACTTAGGCTTGCAACCGATGTAATTGGTGATGCTGCATTTGGTGTCAACTTTGGACTCTCAAATCCCAATTATTCATCTAATTATGATTCATCAATCAAGAACAACAACAATGTTAATTCTAATGTTAACGAGGAAGTTTCTGATTTCATTAATCAACATATTTATTCCACTACACAACTCAAAATGGACCTATCTGGTTCATTTTCTATCATTCTAGGACTACTTGTCCCGTTGCTTCAAGAACCGTTTCGGCAGATCTTGAAGCGAATTCCGAGTACCATGGATTGGAAAATTGAGAATACTAACAAGAAACTGAGCGGGCGGCTCGACGGGATTGTGAAGAGGAGGATGGAAGAAAGTAACAGGAGTTCCAAGAATTTCCTGTCACTTATTTTGAATGCAAGAGAATCAAAGAATGTGTCTGAGGATATATTGACACCTGATTATATTAGTGCTGTTACTTATGAACACTTGCTTGCAGGGTCAGCTACCACTTCTTTTACATTGTCTTCTATTGTTTATTTGGTTGCTGGCCATCCTGAAGTTGAGAGCAAGTTGATTCGAGAGATCGATGCCTTCAGTCCACCCGATCGGATGCCGACTGCTCAAGAGCTTCAAGATAGTTTTCCTTATCTTGATCAGGTGATTCAAGAGTCCATGAGATTTTACATGGTCTCCCCATTAGTTGCAAGGGAAACATCAACTGAGGTAGAGATAGGAGGTTACCTCCTTCCAAAGGGAACATGGGTGTGGCTAGCACTTGGAGTTCTAGCAAAAGATCCAAAACACTTTCCAGAGCCAGAGAAGTTCACACCAGAGAGATTTGACCCTAAATGTGATGAGATGAAACAAAGGCACCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGTGCTTGTATTGGTAAAAAATTTTCACTACAAGAGATCAAGCTCTCTCTTATTCATTTGTATAGGAAATACTTGTTTCGCCATTCACCTAACATGGAGAAACCTTTGGAACTAGAATATGGTATAGTTCTCAATTTCAAGCACGGTGTCAAGCTTAGAGTCATAAAGAGAACAAATTAA 1557 0.404 MLGLIAGFVCYFYGPYWRLRRVPGPPSLPLVGHLPFLAKYGPDVFSVLAKEYGPIYRFHMGRQPLIIVADAELCAEVGIRKFKQIPNRSIPSPISASPLHQKGLFFTRGQRWSTMRNTIISMYQPSHLASLIPTMQSFIESSTQNLDQITNTNEDITFSNLSLRLATDVIGDAAFGVNFGLSNPNYSSNYDSSIKNNNNVNSNVNEEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPLLQEPFRQILKRIPSTMDWKIENTNKKLSGRLDGIVKRRMEESNRSSKNFLSLILNARESKNVSEDILTPDYISAVTYEHLLAGSATTSFTLSSIVYLVAGHPEVESKLIREIDAFSPPDRMPTAQELQDSFPYLDQVIQESMRFYMVSPLVARETSTEVEIGGYLLPKGTWVWLALGVLAKDPKHFPEPEKFTPERFDPKCDEMKQRHPYAFIPFGIGPRACIGKKFSLQEIKLSLIHLYRKYLFRHSPNMEKPLELEYGIVLNFKHGVKLRVIKRTN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60558g00009 518 SUPERFAMILY Cytochrome P450 15 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Stsc60558g00009 518 FunFam Cytochrome P450 3A4 8 518 - -
Stsc60558g00009 518 PRINTS E-class P450 group I signature 49 68 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 165 183 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 Pfam Cytochrome P450 23 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 Gene3D Cytochrome P450 12 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60558g00009 518 PANTHER THROMBOXANE-A SYNTHASE 7 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60558g00009 Stsc-Chr60558 81274 86924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60558g00009 60 516 Cytochrome P450 AT2G26170 70.678 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60558g00009 K20771 - gmx:100805689 837.41