Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60556g00013 ATGGAACCGTCAGGATTCCAGAGAACACATATGAGCAATAGCATGGAACCTAGAAATGAATTTCACCATGGACCACACTCGGTAACACATGACTGTATGGATGGCAGTCATACCAACAGAAGACCCCCAGACCTCAATAAATCAGAAGTTAAGCCTGTACTTAATTACTCCATTCAGACTGGTGAGGAATTTGCACTTGAATTTATGAGAGATAGGGTGAATCTCGGGAAACCTGTATTTTCAAATGTTGGTGATCCCAATTATACAACGGGATATATGGAGCTGCAAGGCATGTTAGGCATGGGTCATGCTGGATCTGGAAGTGGATCAGACATTTCTATGCTCTCGATGGTTGACAAATATCCAAAAGAGTTTGATAAAATGAACACATCGTTACATGGAGACAGAAGTAATTATGGGTCCATGCGATCAATACCAACTACTTCATTGAGTCAAGACAATAGACAATTTGTGCAGAGGTATGGCTCTTCTCGAGGTTATGATAGCTCATCGTTGATGATGAAGTTTCTTTGCAGCTTTGGTGGTAGAATATTACCACGACCCAGTGATGGAAAGCTAAGGTATGTCGGAGGTGATACACGTATTCTTCGCATAAGAAAGGACATAACTTGGCAGGAGCTTATGCATAAAGCATTGCAAATCTATAGTCAGGTCCAAGTAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTGTCTGTATCATCTGACGAGGATTTGCAGAATATGATGGAGGAGTGTACCCATCTACAAGATAGAGAAGGAATGCAGAAGCTTAGGATGTTTTTGTTCTCAATCAATGATTTGGAGGATGCTCAGTTTGGTCTTGGTAGCATGGGGGATGATTCTGAGATCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGGAGAAATTCAACCCTGATTGGTGTCGGCTTTTCAGCAGATGATGTGCATGAATTAGACGGACAAACTTTTGAGAGGGAGACTAATAGAGTTGCTGTAGAATCTGAAGGTGTTAGCAATGTTCCCTTGACTAACAATTTTGACTTGCCCTTGGATAGTCAGTCTTCTCAACCAGTGCTATCCACGGCCCCAAATTCCTATGGAACCTATCCTCTGTTTCATAGTGACCAAATCATGCACCAAGAGGAGGCAAGAGGTCAACATGGCCTTAATCCTGCTTATATGCCTGTTGTTGGAGAGACTCCTATTACAATGCCTACACAGGTGGTTATTAATCCACAAGGGGTTTTGAATGACATCTATCCACCAAGTGGATTACACGTCCAAAGTTCAGAAATACCTACAACTCTGATGGCAAATACTTCAATTCAACAAGGAATTGACCCTGGCAAAACTTTCTCCTTAGAAACACCACTCCCAGCTCCTGTGCAACCGTTTGATGGTTACCCGAAAAATATTCTTCCTGAAGTATCAGTTGCAGTTACTGTGCCAGAGGGGCATTCATTGCCTCCAACTAAAAGGGAGCAGCTTCAGGATAATGAAGGGGCTTCTTCTACAACTAGCAGCACCTTTGGTCCAACTTACGTTGATTCTCACTCCAATGCAGTTGACTTGAGTTGTCTTCACCCTCCTCCTCTTCCCAAAAGAGTTTACTATTCAGAAAGAATTCCGAGGGAGCAAATAGAGATGCTGAATCGGTCTTCTAAGTCTGATGATGCTCATGGTTCTCAGTTTAATGTGTCAGAGTTACTTACTGAAGTCAACCCGACGGAACCACTTACAGAATCTGGTGAAAACTTGCAGGATGGAAATCTGTCTAATCTAACTGAGTATTCAAAGGTTGCAGCAAAACCCTTGCAATCAGATGGAAATACAATTGATAATGGAGCTGTTAAACATCAAAAGCAATTGCCTGATACATGCGGTCAGCTGAAGTCAAAGTTGAGTGAGCATGTAAACCCCGAGTTGAAGCAGGTGTTGGCCAATAATGAAGGAAGCATAGATGCTCTAAATATGGATAGCGTTCTTAAGTTGGAAACTGAAATTAATAATAAGGACAACCATAACAAACCCCTGCTTGGTGAGAAGAAGGGCAGTAAGCCAGACTTAACAACTTTGCAACAGGTTCCTTCTGTTAAGCAACATGAGGATCCAGCATCCAATCTTCCAGATATTGATTGGGGTCGTGTTTCTGTGAAGGACTCTAAGGATGATTCTGTAAATGGGAATGCTACGACTAATGGTGATTCACAGCATTATCCTTCAAATGTTTCCAAAGAAGGACAAGGTGAGATGGGAAAGGTGGAAGGAGATAATAGAACTCAACATGTTATGCCTCTACCAGCTGAAGAAAAATATCAGAATGACTTACATGGAAGAATTGGAACAGAAACGGCTGTTCCTGAGTTAAACTATGATCATTCCCAATTGAATGAAGCTGAAAGTATGCAGTTTGGTGCTATGATGGAAAATGCAAGGGCACAAGAGTCAGAATTTGAGGATTCATTGGTTGAAGCAAGAAAGAGTGCTCTGCCTCCACTTGATCCTTCTTTAGGGGATATTGATATGAGTGGCGTGCAGGTAATAATGAATGAAGATCTTGAAGAGCTTAAGGAACTGGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGCGAGGAACAGATGTCGCAATTAAAAGGATAAAGAAAAGCTGCTTCACTGGTCGATCATCTGAACAAGAGAGACTG 2715 0.4203 MEPSGFQRTHMSNSMEPRNEFHHGPHSVTHDCMDGSHTNRRPPDLNKSEVKPVLNYSIQTGEEFALEFMRDRVNLGKPVFSNVGDPNYTTGYMELQGMLGMGHAGSGSGSDISMLSMVDKYPKEFDKMNTSLHGDRSNYGSMRSIPTTSLSQDNRQFVQRYGSSRGYDSSSLMMKFLCSFGGRILPRPSDGKLRYVGGDTRILRIRKDITWQELMHKALQIYSQVQVIKYQLPGEDLDALVSVSSDEDLQNMMEECTHLQDREGMQKLRMFLFSINDLEDAQFGLGSMGDDSEIQYVVAVNGMDLGSRRNSTLIGVGFSADDVHELDGQTFERETNRVAVESEGVSNVPLTNNFDLPLDSQSSQPVLSTAPNSYGTYPLFHSDQIMHQEEARGQHGLNPAYMPVVGETPITMPTQVVINPQGVLNDIYPPSGLHVQSSEIPTTLMANTSIQQGIDPGKTFSLETPLPAPVQPFDGYPKNILPEVSVAVTVPEGHSLPPTKREQLQDNEGASSTTSSTFGPTYVDSHSNAVDLSCLHPPPLPKRVYYSERIPREQIEMLNRSSKSDDAHGSQFNVSELLTEVNPTEPLTESGENLQDGNLSNLTEYSKVAAKPLQSDGNTIDNGAVKHQKQLPDTCGQLKSKLSEHVNPELKQVLANNEGSIDALNMDSVLKLETEINNKDNHNKPLLGEKKGSKPDLTTLQQVPSVKQHEDPASNLPDIDWGRVSVKDSKDDSVNGNATTNGDSQHYPSNVSKEGQGEMGKVEGDNRTQHVMPLPAEEKYQNDLHGRIGTETAVPELNYDHSQLNEAESMQFGAMMENARAQESEFEDSLVEARKSALPPLDPSLGDIDMSGVQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERL 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60556g00013 905 SUPERFAMILY CAD & PB1 domains 189 278 - -
Stsc60556g00013 905 SMART PB1_new 188 275 IPR000270 GO:0005515
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 15 47 - -
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 500 522 - -
Stsc60556g00013 905 SUPERFAMILY Protein kinase-like (PK-like) 851 895 IPR011009 -
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 676 691 - -
Stsc60556g00013 905 Pfam PB1 domain 190 273 IPR000270 GO:0005515
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 695 709 - -
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 731 752 - -
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 1 48 - -
Stsc60556g00013 905 PANTHER OS05G0427100 PROTEIN-RELATED 169 511 - -
Stsc60556g00013 905 ProSitePatterns Protein kinases ATP-binding region signature. 867 892 IPR017441 GO:0005524
Stsc60556g00013 905 Gene3D - 192 275 - -
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 676 763 - -
Stsc60556g00013 905 Coils Coil 816 836 - -
Stsc60556g00013 905 CDD PB1_UP2 177 273 - -
Stsc60556g00013 905 MobiDBLite consensus disorder prediction 491 522 - -
Stsc60556g00013 905 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 193 275 - -
Stsc60556g00013 905 Gene3D Phosphorylase Kinase; domain 1 846 904 - -
Stsc60556g00013 905 ProSiteProfiles Protein kinase domain profile. 861 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60556g00013 Stsc-Chr60556 89321 93179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60556g00013 803 905 MAP Kinase Kinase Kinase AT1G16270 69.903 1.24e-38 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60556g00013 - - aip:107612789 1047.34