Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60555g00007 ATGGCTGGAAAAGGCGAAGGTCCGGCGATTGGAATCGATTTGGGAACGACGTACTCATGCGTCGGTGTTTGGCAGCATGATCGTGTTGAGATCATAGCCAACGATCAGGGTAACAGGACAACACCTTCCTATGTGGCTTTCACTGACACGGAGCGCTTGATCGGAGATGCCGCCAAGAACCAGGTGGCCATGAACCCTACTAACACCGTCTTCGATGCGAAGCGTTTGATTGGAAGAAGATTTAGCGATGCATCGGTGCAGAGTGACATGAAACTGTGGCCGTTCAAGGTGATCCCAGGCCCCAGCGACAAGCCTATGATCGTGGTGAACTACAAGGGAGAGGAAAAGCAATTCTCTGCTGAGGAAATCTCCTCCATGGTTCTCATTAAGATGAAGGAAATTGCAGAGGCCTACCTAGGCTCCACCATAAAGAATGCCGTGGTCACTGTTCCTGCTTACTTCAATGACTCTCAACGTCAAGCTACCAAAGATGCCGGCGTCATCTCTGGGCTCAATGTCATGCGTATCATCAATGAGCCTACCGCCGCANNNNNNNNNNACGGCCTTGACAAGAAGGCCGGAAGCACCGGCGAGAAGAATGTTCTGATCTTTGATCTTGGTGGTGGTACTTTTGATGTTTCGTTGCTTACAATTGAAGAGGGTATTTTTGAGGTGAAGGCTACAGCTGGTGATACTCACTTGGGTGGTGAGGATTTTGATAACAGGATGGTGAACCATTTTGTCCAGGAGTTCAAGAGAAAGAACAAGAAAGACATTAGTGGGAATGCTAGGGCTCTTAGGAGATTGAGAACGGCTTGTGAAAGGGCAAAGAGGACCTTGTCTTCCACTGCCCAAACAACCATTGAGATTGATTCTCTTTATGAGGGTATTGATTTTTACACCACCATCACCCGTGCTAGGTTTGAGGAGCTGAACATGGATCTCTTCAGGAAGTGCATGGAACCTGTTGAGAAGTGTCTGAGGGATGCTAAGATGGATAAGAGCAGCGTCCATGATGTTGTTCTTGTGGGTGGTTCTACTAGAATTCCTAAAGTTCAGCAATTGTTGCAGGACTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATTAACCCAGATGAGGCGGTTGCCTACGGTGCTGCCGTTCAAGCTGCCATTCTCAGCGGCGAGGGCAATGAGAAAGTGCAGGATCTTCTGTTGTTGGATGTCACTCCTCTCTCCCTTGGTTTGGAGACTGCAGGAGGTGTTATGACTGTGTTAATTCCCAGGAACACCACCATTCCCACCAAGAAGGAACAGGTGTTCTCAACTTACTCTGATAACCAACCTGGTGTGTTGATTCAGGTTTATGAGGGTGAAAGAACAAGGACCCGTGATAACAATTTGCTTGGCAAGTTTGAGTTGTCTGGCATACCTCCTGCTCCTAGGGGTGTCCCACAGATTAATGTTTGCTTCGACATTGATGCCAATGGTATTTTGAATGTATCTGCGGAGGACAAGACAACAGGGCAGAAGAACAAGATCACAATTACAAACGACAAGGGTAGGCTCTCCAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCGGAGAAGTACAAGGCAGAGGACGAGNNNNNNNNNNAAGTGGAGGCCAAGAATGCACTCGAGAATTATGCCTACAACATGAGGAACACTATCAAGGATGATAAGATTGCTTCCAAGCTTTCTGCCGATGACAAGAAGAAAATAGAAGATGCAATTGAGGAAGCTATCCAATGGCTTGAAGGGAACCAACTTGCTGAGGCTGATGAGTTTGAGGACAAGATGAAGGAGTTGGAAGGCCTTTGCAACCCCATCATTGCTAGAATGTACCAAGGTACAGGAGGTGAAGCTGGTGGTCCCATGGATGACGATGGTCCTGCTGCGGGCAGCGGAAGCGGTGCTGGTCCCAAAATTGAGGAAGTTGACTAA 1947 0.4766 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQSDMKLWPFKVIPGPSDKPMIVVNYKGEEKQFSAEEISSMVLIKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAXXXXGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEXXXXVEAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEEAIQWLEGNQLAEADEFEDKMKELEGLCNPIIARMYQGTGGEAGGPMDDDGPAAGSGSGAGPKIEEVD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60555g00007 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Stsc60555g00007 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Stsc60555g00007 648 FunFam Heat shock 70 kDa protein 71 126 - -
Stsc60555g00007 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc60555g00007 648 SUPERFAMILY Actin-like ATPase domain 196 388 IPR043129 -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Stsc60555g00007 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Stsc60555g00007 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 622 IPR029048 -
Stsc60555g00007 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Stsc60555g00007 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 531 IPR029047 -
Stsc60555g00007 648 Coils Coil 518 536 - -
Stsc60555g00007 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Stsc60555g00007 648 FunFam Heat shock 70 kDa 235 318 - -
Stsc60555g00007 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524|GO:0140662
Stsc60555g00007 648 FunFam Heat shock 70 kDa protein 538 648 - -
Stsc60555g00007 648 FunFam Heat shock protein 70 10 196 - -
Stsc60555g00007 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 543 IPR029047 -
Stsc60555g00007 648 FunFam Heat shock 70 kDa protein 197 264 - -
Stsc60555g00007 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Stsc60555g00007 648 FunFam Heat shock 70 kDa 391 549 - -
Stsc60555g00007 648 Gene3D - 10 384 - -
Stsc60555g00007 648 Pfam Hsp70 protein 9 617 IPR013126 GO:0005524|GO:0140662
Stsc60555g00007 648 MobiDBLite consensus disorder prediction 616 648 - -
Stsc60555g00007 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Stsc60555g00007 648 Gene3D - 71 126 - -
Stsc60555g00007 648 Gene3D - 192 366 - -
Stsc60555g00007 648 Gene3D - 538 648 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60555g00007 Stsc-Chr60555 49529 52281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60555g00007 1 648 Calmodulin-binding Proteins AT3G12580 91.398 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60555g00007 K03283 - gmx:100816111 1161.75