Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60555g00006 ATGGAGGATTCAGGGAGTTCAAGATGGAATCCTACAAAGGAGCAGATAAGCATGTTGGAGAATCTTTATAGGCAGGGAATAAGAACACCGAGTGCTGAGGAGATTCAGCAGATAACTGCAAGGTTGAGAGCCTTTGGTCACATCGAAGGCAAGAATGTTTTCTACTGGTTTCAGAATCATAAGGCCAGACAGAGGCAGAAGCAAAAACAACACACTCTCGCTTACTTCAATCGCTGCTTTCTCCATCATCATCAACCACCTTTTACCCCAAACAACGTTATGTGCCGTCCATGTTCACCGGAATATGCTCATGAACAAGCACAAGTTGTTGTTCCAGTAGGTATGATGAGGAGAATAATGCCCGGCAGTGAGAAAGTTGTAACAATGTGCAGTGACATGGAAGGAGAAGAAGAAAGAATATTAGATTACTATGGACTTGGCTTTAATAAGCAAGTAGATAATAAAACTTTGAATCTTTTTCCTTTGCATCCAACTGGCATCTTGGAAGAGAAGAAAGAAGCACAACAAAACAACAACAAGAAGAATGCGATGACCATGAAGTGCTCTTTCGTGCCTTCTTCAACATCATCATCACCACTTTCCACTGATACTACGTTTTCTGATTCTCCCCATCATGATGATGGACATGGACAACAACAACCTTTCTTTGATTTCTTCGTCACTTCTGGACAAGGAGATGGACAAGGACTAAGGCTCATTTGA 723 0.4177 MEDSGSSRWNPTKEQISMLENLYRQGIRTPSAEEIQQITARLRAFGHIEGKNVFYWFQNHKARQRQKQKQHTLAYFNRCFLHHHQPPFTPNNVMCRPCSPEYAHEQAQVVVPVGMMRRIMPGSEKVVTMCSDMEGEEERILDYYGLGFNKQVDNKTLNLFPLHPTGILEEKKEAQQNNNKKNAMTMKCSFVPSSTSSSPLSTDTTFSDSPHHDDGHGQQQPFFDFFVTSGQGDGQGLRLI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60555g00006 240 SUPERFAMILY Homeodomain-like 5 73 IPR009057 -
Stsc60555g00006 240 MobiDBLite consensus disorder prediction 189 206 - -
Stsc60555g00006 240 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 184 IPR044555 GO:0003700|GO:0099402
Stsc60555g00006 240 CDD homeodomain 8 68 IPR001356 GO:0003677
Stsc60555g00006 240 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Stsc60555g00006 240 MobiDBLite consensus disorder prediction 189 224 - -
Stsc60555g00006 240 FunFam WUSCHEL-related homeobox 4 6 73 - -
Stsc60555g00006 240 Gene3D - 6 86 - -
Stsc60555g00006 240 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Stsc60555g00006 240 SMART HOX_1 4 71 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60555g00006 Stsc-Chr60555 44262 45214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60555g00006 4 226 Wox Gene Family AT5G59340 40.996 5.76e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc60555g00006 Homeodomain 4.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60555g00006 - - ahf:112736626 239.965