Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60555g00004 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCACCAGCAAGCGAATCATCATCAACCAAACATCAATGAAAACCCTCAGCTGCTTCCGCCGCTTCCCCCATATGCTACTGGTGGACCTGTGGGAGGAAGCAGCGGAATTGGCTCAATTAGGCCTGGCTCGATGGCTGATCGAGCCAGGCTAGCAAAGATACCACCTCCAGAGGCTGCACTCAAGTGTCCTCGATGCGATTCGACGAACACCAAATTCTGCTACTTCAACAATTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGTAGGCGTTATTGGACAAGAGGCGGCGCTCTGAGGAACGTTCCGGTAGGCGGTGGATGCCGCCGTAACAAGAAGAACAAGAGGAGTAATAGCCGCTCCAAATCTCCACCAAACAACAACAATAACAATCAAAAACAACAAATTTCGAGTGCAATTCCTTCAAATCATCATGAGTTTATTGGTCATCCTCAGTTATCTCATCATCATCAACCACCAAACCTTCCTTTCATGGCTTCTCTCCAGAATCTTAGCCGCTATGGTAGTGGGGGAATTGTTGCAGCAAACATGGGTCTGAGCTTAACAGATCATCATCCTCACATGGGGTTTGGTAATTCTTCTGCTTCTGCTATAGCTGCCAGTGGAGTAGATCAGTGGCGGTTACAGCAGTTTCCGTTCTTAAACGGTTTTGATTCATCAAATTCTTCTTCAGCTGCAGCATCATCATTATACCCTACTACTTTTCATCATCATCAAAATGAAGGTATTGCTACTGAAGTTGCAGCAGCTTCTTCAGGCTTGGTTGTTGCTGACATAGCTGCAAATTCTAGGGTTCATAATCAGATGGCACCACCAGTGAAGATGGAAGAAAACGCAGTAGCCATGAATTTGTCAAGAACAGCAGCAACGACCATGAACAATAATGTCTCTGAAAATAATCAATACTATTCTTGGACAACAGATATGTCAGCTCTTGCTTCTTCTTCTTCCACTCCTCATAATCTCTTATAA 1041 0.4534 MVFSSIPVYVDPPNWHQQANHHQPNINENPQLLPPLPPYATGGPVGGSSGIGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNKRSNSRSKSPPNNNNNNQKQQISSAIPSNHHEFIGHPQLSHHHQPPNLPFMASLQNLSRYGSGGIVAANMGLSLTDHHPHMGFGNSSASAIAASGVDQWRLQQFPFLNGFDSSNSSSAAASSLYPTTFHHHQNEGIATEVAAASSGLVVADIAANSRVHNQMAPPVKMEENAVAMNLSRTAATTMNNNVSENNQYYSWTTDMSALASSSSTPHNLL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60555g00004 346 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 253 IPR045174 GO:0003700|GO:0006355
Stsc60555g00004 346 MobiDBLite consensus disorder prediction 119 154 - -
Stsc60555g00004 346 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Stsc60555g00004 346 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Stsc60555g00004 346 MobiDBLite consensus disorder prediction 136 154 - -
Stsc60555g00004 346 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60555g00004 Stsc-Chr60555 25499 27159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60555g00004 8 343 C2C2-Dof Transcription Factor Family AT3G55370 37.673 3.69e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60555g00004 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60555g00004 - - aip:107629110 421.779