Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60555g00003 ATGGGGGAGGGGGAGCAAGACCAAGACGACGGAGTAGTGGACACGTTGATTCAGTTGCTGAAGGAGATTGCTGCCATCTCTGATTTCAGGCCTTTGCTCAAGAAGCACTATTGCAACTTGTCCAGAAGGCTCAATCTTCTCACTCCTTTGTTCCATGAAATTAGGGACTTGAAACACACCCATGCTGTGATTCCTCATCATACTTTCAAAGCCATGCTTCACTTAAGGGATGCTCTTCAATCCGCCAGGGATATCCTCGCCTTCGGTGCTGATTGCAGTAAGATTTTCATGGTTCTTGAGAGGGAGCAAATTATGAGTAAGTTCTATGAGGTCACGGCTAGGTTGGAGCAGTCCTTGGCCGCGATTTCCTGCTATCAACTTGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTTCAAAGAGCAAAAGGGAGGGTTGATGAACCTGATATCAAGTTGTATGAGGATGTGCTGTCCCTCTACAACAATAACACTGATGCAGCTACCAATCCTGCTGTTATTCGGCAGTTAGCTGAAAAGTTGGAGTTGATGGGAATAGCTGAGCTAACACAAGAGTCTCTTGCGTTGCACGAGATGGTGGCGGCGAGTGGGGGCGATCCGGGCGGACGCATCGAGAAGATGTCAATGCTATTGAAGAAGATAAAAGATTATGTTCAAACAGAAAATCTAGTGTATGATAATGTAGGAGGAAAGGGGCATTCTTCAAAGTCCAGCAAACAAGTGACAAATGAAAGGAATCATCAGACTCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTACAAGCAGGGCACAGAACATGCCCAAAAACACAGCAGAGCCTCACTAGTACTGTCCTCACACCCAACTACGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATTGAACCACCAAAACGATCAAGCAATCCCGAGCCTAGTAAATCAGTGTCGGCTTATGCCCCGGCCGAGCGAAACAAGATTCAAACTCTTCTCCAAAGGCTCACTTCCGGAAATCCAGAGGACCAAAGAACTGCTGCAGGGGAGATCCGGCTTCTTGCGAAACGCAATGCGGATAACCGTGTGGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCCGTACCTGATTCCCGCACTCAAGAGAATGCTGTTACCGCGCTTCTGAATCTTTCCATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATTCCAGGCATAGTTCATGTGCTTAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATCGACGAAAACAAGGTTACAATTGGTGCTTCAGGAGCCATACCACCATTAGTAACACTTCTAAGGGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCGGTCAGGGCCGGCGCCATTCCCATATTGATGCAACTTCTGACAGAACCTAATGGAATCATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGTCTAGCCATCCTGATGGAAAGGCTGCCATTGGTGCTGCAGAGGCAGTGCCATTTTTGGTAGAGTTTATTGCAAATGGCTCACCGAGGAACAAAGAAAATGCGGCTGCTGTCTTGGTTCATCTTTCTTCCGGAGATCAACAATATCTAGCAAAGGCCCGAGAGCTCGACGTGATGGCTCCTTTGTTGGATTTGGCTCAAAATGGTACAGACAGAGGAAAAAGGAAGGCAGCTCAATTGCTAGAACGCATGAGCAGGTTCCTTGAGCAGCAGCAGCAGCAAGAGGAAGAAGAGGAGCAGGAAGTGGAAGTTCAGGCACAAAATGAACTGAATGATGTTGCACAACCACCTCTTATTACAAACATGGATGATACCTGA 2031 0.4653 MGEGEQDQDDGVVDTLIQLLKEIAAISDFRPLLKKHYCNLSRRLNLLTPLFHEIRDLKHTHAVIPHHTFKAMLHLRDALQSARDILAFGADCSKIFMVLEREQIMSKFYEVTARLEQSLAAISCYQLDISDEVKEQVELVLAQFQRAKGRVDEPDIKLYEDVLSLYNNNTDAATNPAVIRQLAEKLELMGIAELTQESLALHEMVAASGGDPGGRIEKMSMLLKKIKDYVQTENLVYDNVGGKGHSSKSSKQVTNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLQAGHRTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRSSNPEPSKSVSAYAPAERNKIQTLLQRLTSGNPEDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLREGTQRGKKDAATALFNLCIYQGNKGKAVRAGAIPILMQLLTEPNGIMVDEALAILAILSSHPDGKAAIGAAEAVPFLVEFIANGSPRNKENAAAVLVHLSSGDQQYLAKARELDVMAPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQQQQEEEEEQEVEVQAQNELNDVAQPPLITNMDDT 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60555g00003 676 Pfam Neurochondrin 518 646 IPR008709 -
Stsc60555g00003 676 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Stsc60555g00003 676 Coils Coil 628 663 - -
Stsc60555g00003 676 Gene3D - 348 670 IPR011989 -
Stsc60555g00003 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 525 567 IPR000225 GO:0005515
Stsc60555g00003 676 MobiDBLite consensus disorder prediction 240 265 - -
Stsc60555g00003 676 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Stsc60555g00003 676 Pfam Armadillo/beta-catenin-like repeat 474 512 IPR000225 GO:0005515
Stsc60555g00003 676 Pfam Armadillo/beta-catenin-like repeat 391 430 IPR000225 GO:0005515
Stsc60555g00003 676 MobiDBLite consensus disorder prediction 336 355 - -
Stsc60555g00003 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Stsc60555g00003 676 SUPERFAMILY RING/U-box 252 339 - -
Stsc60555g00003 676 SMART arm_5 391 431 IPR000225 GO:0005515
Stsc60555g00003 676 SMART arm_5 432 472 IPR000225 GO:0005515
Stsc60555g00003 676 SMART arm_5 555 595 IPR000225 GO:0005515
Stsc60555g00003 676 SMART arm_5 514 554 IPR000225 GO:0005515
Stsc60555g00003 676 SMART arm_5 597 637 IPR000225 GO:0005515
Stsc60555g00003 676 SMART arm_5 473 513 IPR000225 GO:0005515
Stsc60555g00003 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 484 526 IPR000225 GO:0005515
Stsc60555g00003 676 MobiDBLite consensus disorder prediction 243 261 - -
Stsc60555g00003 676 Pfam U-box domain 264 334 IPR003613 GO:0004842|GO:0016567
Stsc60555g00003 676 SUPERFAMILY ARM repeat 362 644 IPR016024 -
Stsc60555g00003 676 FunFam RING-type E3 ubiquitin transferase 263 337 - -
Stsc60555g00003 676 MobiDBLite consensus disorder prediction 639 676 - -
Stsc60555g00003 676 PANTHER U BOX DOMAIN-CONTAINING 34 637 - -
Stsc60555g00003 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Stsc60555g00003 676 FunFam RING-type E3 ubiquitin transferase 346 642 - -
Stsc60555g00003 676 CDD RING-Ubox_PUB 265 317 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60555g00003 Stsc-Chr60555 16582 20039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60555g00003 15 663 U-box Gene Family AT3G46510 66.463 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60555g00003 - - gmx:100812160 973.385