Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60554g00005 ATGAGAGTGGCGGAGAGAGGGGCGGTGAGACATGAGAGTGGGAAACACGGTGAGGGCTTCGTTTATGTCGAAAGTAGGAATATGGGGGAGAGTGGGAGTGGGTTTGCATTCGGTGTTCGGAGATTTTTAAGTAGAGGGGTTTCTGGGAATGGCAGAAGAACAGATCCAAATGGGAGAAGCCAAACAACAAGGATGGTTGGGTCTTATACGGTATTTGTAGACAATCTTCCGACTGAAATAACAAAGAGAGATCTATACAAGGAGTTTGGAAAAAATGGCTATATAACAGATGTCTTTGCATCAAGGAAGATGAGGAGGAAGACAAAGTGCCCATTTGCATTCATAAGATATATCTTGTACGGAGGTGCGATGAGAGCCATTGGTAGATTGAATGCGTCATCTTGGGTTGAAGTGAAGCTATATGTTACTTTGTCCAAAGTTAGACGGGAAATGAAAAACAATAACATGAGACAAGAGAAGGAGGCCCAACCAGCGGCGGTACAGAGGAGGATCCAGAAATAG 522 0.4444 MRVAERGAVRHESGKHGEGFVYVESRNMGESGSGFAFGVRRFLSRGVSGNGRRTDPNGRSQTTRMVGSYTVFVDNLPTEITKRDLYKEFGKNGYITDVFASRKMRRKTKCPFAFIRYILYGGAMRAIGRLNASSWVEVKLYVTLSKVRREMKNNNMRQEKEAQPAAVQRRIQK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60554g00005 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Stsc60554g00005 173 CDD RRM_SF 71 131 - -
Stsc60554g00005 173 Gene3D - 47 171 IPR012677 -
Stsc60554g00005 173 MobiDBLite consensus disorder prediction 152 173 - -
Stsc60554g00005 173 SUPERFAMILY RNA-binding domain, RBD 13 145 IPR035979 GO:0003676
Stsc60554g00005 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 132 IPR000504 GO:0003723
Stsc60554g00005 173 SMART rrm1_1 70 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60554g00005 Stsc-Chr60554 57978 58499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60554g00005 52 142 Eukaryotic Initiation Factors Gene Family AT1G71770 32.967 7.63e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60554g00005 - K24993 ahf:112794598 71.2478