Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60553g00004 ATGACGAATTTGAAACCGAGGTTTGAAAAAAGAAAAGAGAAAAAAAAAAAAAAAAAGGGTACTCTCGGCGGAAGTGGCTCAAAGCATCTCTCAGTAACTTGCACAGTTGCACCTTACACCTTCCTATATTCGAATGTTAGTCTTCTTCTAGCTTGCTTTCGCTTTCACGCCATCGCCAATTCTTTCTCAGATTTGATAGATATGTCTCTCATAACCACCGATTCCCCCCTCGCTCGTCGCATAGTTCGTTCTTTCTTGCACTTCCTCAACTCCGTTGAACCAGGGCCGGGGGTTGATGCTGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCTTTTAAGCTAAACTCTTCTGGTGTAGATGGTGATCCCGAATCTGATTCCTTGATTGACATATTCAAGAGCCTTGAAGCAAGAAAGCAGTGTGAAACTATCAAGTCAGACCCAAGTCCTATGGATGCTTCTAGTTCATTCTCTGACCTTAATCCATCATCCCTTGCTCAAAATCATATGGAGGCATCGGATTCTCGGGATGAAGATGGGAGACAGGGCACCAACAATTTTGCAGCATCCAAAGATGAACTCTGTGGACAATTTTTTGCTTCTCTGGAGAAAAGTCACTATTTTAGGGCGAATCTCGATGGAACTGATGACCCAATGCAACTAGAGAAAGCATCTTGTCTCTTTCATGATGCTTTTAAGGAGATGGAAAAATCTGGGTCCCCAGTATTAAATCTGAAGAATTTGGCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAGTCCAAGAAATACCATGAGGCAATTGAGTTGTATAACTGTGCAATTGCAGTACATGAAAAAAGTGCTGTTTATTACTGCAACAGGGCAGCTGCTTACACTGAGATTAAAAAATATGCTGAAGCAATCCAAGATTGTCATAGATCTATTGAGATTGATCCGAACTACAGCAAGGCTTACAGTCGTTTGGGTTTAGTATACTATGCACAAGGAAATTACAGAGATGCTATTGATAAAGGGTTCAGAAAAGCCTTGCAATTGGATCCAAATAACCAAACTGTTAAAGAAAATATACGGGTGGCTGAGAATAAATTGATAGAAGAGCATCACAATGCAAATCATAATCAGAGTTTTAGATCATCTTGGGAATTCCCGAACCAATCCACAAGAGGATCAAGAAGCCATGGAGTGCCACCTTTTCCGTCAATGCCATTTAACCCGAATGATATANNNNNNNNNNTAGGGGCATGGCTGCAAATGTGA 1269 0.4106 MTNLKPRFEKRKEKKKKKKGTLGGSGSKHLSVTCTVAPYTFLYSNVSLLLACFRFHAIANSFSDLIDMSLITTDSPLARRIVRSFLHFLNSVEPGPGVDAEGIEVARECLAEAFKLNSSGVDGDPESDSLIDIFKSLEARKQCETIKSDPSPMDASSSFSDLNPSSLAQNHMEASDSRDEDGRQGTNNFAASKDELCGQFFASLEKSHYFRANLDGTDDPMQLEKASCLFHDAFKEMEKSGSPVLNLKNLAESLKSLGNKAMQSKKYHEAIELYNCAIAVHEKSAVYYCNRAAAYTEIKKYAEAIQDCHRSIEIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNQTVKENIRVAENKLIEEHHNANHNQSFRSSWEFPNQSTRGSRSHGVPPFPSMPFNPNDIXXXXGAWLQM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60553g00004 422 MobiDBLite consensus disorder prediction 377 397 - -
Stsc60553g00004 422 MobiDBLite consensus disorder prediction 371 407 - -
Stsc60553g00004 422 MobiDBLite consensus disorder prediction 149 172 - -
Stsc60553g00004 422 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60553g00004 422 Pfam Tetratricopeptide repeat 285 318 IPR001440 GO:0005515
Stsc60553g00004 422 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 246 393 - -
Stsc60553g00004 422 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Stsc60553g00004 422 Pfam Tetratricopeptide repeat 320 353 IPR013105 -
Stsc60553g00004 422 Gene3D Immunoglobulin FC, subunit C 72 140 - -
Stsc60553g00004 422 Gene3D Tetratricopeptide repeat domain 246 405 IPR011990 GO:0005515
Stsc60553g00004 422 ProSiteProfiles TPR repeat profile. 319 353 IPR019734 GO:0005515
Stsc60553g00004 422 MobiDBLite consensus disorder prediction 145 189 - -
Stsc60553g00004 422 SMART tpr_5 251 284 IPR019734 GO:0005515
Stsc60553g00004 422 SMART tpr_5 319 353 IPR019734 GO:0005515
Stsc60553g00004 422 SMART tpr_5 285 318 IPR019734 GO:0005515
Stsc60553g00004 422 ProSiteProfiles TPR repeat profile. 285 318 IPR019734 GO:0005515
Stsc60553g00004 422 PANTHER LD24721P 73 406 IPR047150 -
Stsc60553g00004 422 SUPERFAMILY TPR-like 250 363 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60553g00004 Stsc-Chr60553 24800 33648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60553g00004 250 358 U-box Gene Family AT3G07370 29.204 1.45e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60553g00004 K16365 - gmx:100799770 501.516