Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60553g00001 ATGTCGTTAGCCCCGCCGCAAAGCTATGGTGATCTTCCAACTTTCAGAACTTGGAGGGAACAGAGTGAAGAAGACGAGGGGTTAGGGTTGCTTTCGTTATTTGTGAGGGAGAATTCTCTGAACAAAGGCTACTCCACTCTCTCAGTTGAGAAACCCGAACAAGATATCATTGTTTCCAAAAATGGCATGTTCTCCGCCGGCTTTTTCAAAGTCGGTGATAATGCCTTCTCCTTTGGGATATGGTTCACCACAACGCCACCTGGTTCCCAAACCACCGTCGTTTGGACCGCAAATCGCGACCAACCCGTCAACGGAAAGCGCTCAACGATCTCCCTCTCACACTCCGGCAATCTTGCTCTGCTAGATGCCGGCCAGTTCCAAACATGGTCTTCCAACACGGAGTCATTTTTTCCAAGTCAGTTGCTTCTAAGAGACGACGGAAATCTTGTTCTAGAAGATTCCGAAGGAGTTATTCTCTGGCAAAGTTTTCATTTCCCGACTGACACTCTACTTCCCGGACAGTTTCTCACGCGAAGCACGCAGCTAGTTTCTTCAAGAACTGAGAGTAACCGCTCCTCTGGCTTCTACAAGTTGTCCTTTGATGATGACAACGTTCTTAGCCTTCTTTACGACGGCCCTGACGTGTCAAGCAGTTATTGGCCCCCTCCTTGGGAATCACGCTGGCAAGCTGGAAGGTTCACTTACAATAGTAGCAGAATTGCGGTGCTTGATTCTCTTGGGTGTTTCACTTCATCAGATAAATATACTGTGAGAACTTCTGATTACGGTGTGGTGCTTCCTAGAAGATTGACACTTGATCATGATGGAAATCTTCGAGTTTACAGTCAAGATCTGTCATCGCAAAGATGGTATGTTTCGTGGCAAGCGATTCTTGATGGTTGTAGCATTCATGGTGTTTGTGGTGCTAATAGTGTTTGCAGCTTTGATCATAGAAAGGGAAGGAAGTGTTCGTGTGTTCCGGGGTACAAAGTAAAGAATCAGAGTGATTGGTCTTATGGTTGTGAATCCATGTTTGCTGTTGCTACTTGTAATAATGAAAGTGATAAGGAGTTTAGTTTCTTGGAAATGAAGCATGCTGAGTTTTATGGCTATGACAAGAATTACACGCCCAATTCTACCTTCACCGGTTGCAAAACTTTGTGCTTGAATGACTGTGAATGCAAAGGGTTTCAGTATTCATACGACGAAGCAAATCGCTACTTCACCTGCTACACGAAAACACAGTTGCTCAACGGCGAAAACTCTCCGAGAGTGGCAGGAATTGTAACCTACTTGAAAGTGCTCAAAACTAAAAGCTTCCCTGCCATGTATGGAGAATTTGTCATAAAAAACAGTGTTTGTTCAGTGGAAATTCCTAGAGAGTATTTAAAGAAACATGTGAGCCGTTTCTTGAACTTCTTTTTGTGGTTTGCAGCTGCAATTGGAGTTCTTGAAATCATTTGCATTTTCATTGTTTATATCTTGATCAAGAGCCACCATGGTTCTAGCATAGATCAACATGGCTATCAGCTTGCAACAGTGGGATTCAGAAAATTTAGTTATTCTGAGCTAAAGAAGGCAACAAAAGGGTTCAGCCAAGAGATTGGAAGGGGTGCAGGAGGAACTGTATACAAAGCTCTATTGTCGGATCAAAGAATTGCTGCTGTAAAGAAACTCAATTATGCTAAGCAAGGTGAAAGTGAGTTCCTCACTGAAGTGGGCATCATTGGAAGGCTCAACCACATGAACTTGATCGAAATGTGGGGCTATTGCGCTGAGGGAAAGCATCGGTTACTGGTTTATGAGTTCATGGAAAATGGTTCTTTGGCAGATAATCTCTCATCCAATACACTTGATTGGAGCAAGAGATATAACATTGCTCTTGGAACAGCAAGAGGTTTGGCATATTTACATGAAGAATGTTTGGAATGGATTTTGCATTGTGATATTAAGCCTCAAAATATTCTCTTGGATTCGAATTATCAACCCAAGGTTGCGGATTTCGGATTGTCCAAGTTATTGAACAGAGATGATCTCAACAATAGTCCGAATTTCTCAATGATAAGAGGAACCAGAGGGTATATGGCGCCGGAGTGGGTTTTCAACTTAGCAATTACTTCCAAAGTGGATGTTTATAGCTACGGAATTGTTCTCTTGGAGATGATAACCGGAAAGAATCCAGCAGCAGATGTTCAAGCAACTAATGGAGAAGAAGCATACAACGGGAGGCTAGTAACATGGGTGAGACAGAAAAAGAGAGAATCTGCAACTTGGGTGGAGCAAATCATGGATTCTGCAATAGGGTCAAATTATGATAAGAATAAGATGGAAATTTTGGCTAGAGTGGCTTTGGATTGCATAGAAGAAGACAAAGATGGAAGACCCACCATGAGACAAGTGGTGGAAATGCTTCAAAGCCATGATTGTGATGCTAGTGGTGCAGCATAA 2448 0.4289 MSLAPPQSYGDLPTFRTWREQSEEDEGLGLLSLFVRENSLNKGYSTLSVEKPEQDIIVSKNGMFSAGFFKVGDNAFSFGIWFTTTPPGSQTTVVWTANRDQPVNGKRSTISLSHSGNLALLDAGQFQTWSSNTESFFPSQLLLRDDGNLVLEDSEGVILWQSFHFPTDTLLPGQFLTRSTQLVSSRTESNRSSGFYKLSFDDDNVLSLLYDGPDVSSSYWPPPWESRWQAGRFTYNSSRIAVLDSLGCFTSSDKYTVRTSDYGVVLPRRLTLDHDGNLRVYSQDLSSQRWYVSWQAILDGCSIHGVCGANSVCSFDHRKGRKCSCVPGYKVKNQSDWSYGCESMFAVATCNNESDKEFSFLEMKHAEFYGYDKNYTPNSTFTGCKTLCLNDCECKGFQYSYDEANRYFTCYTKTQLLNGENSPRVAGIVTYLKVLKTKSFPAMYGEFVIKNSVCSVEIPREYLKKHVSRFLNFFLWFAAAIGVLEIICIFIVYILIKSHHGSSIDQHGYQLATVGFRKFSYSELKKATKGFSQEIGRGAGGTVYKALLSDQRIAAVKKLNYAKQGESEFLTEVGIIGRLNHMNLIEMWGYCAEGKHRLLVYEFMENGSLADNLSSNTLDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSNYQPKVADFGLSKLLNRDDLNNSPNFSMIRGTRGYMAPEWVFNLAITSKVDVYSYGIVLLEMITGKNPAADVQATNGEEAYNGRLVTWVRQKKRESATWVEQIMDSAIGSNYDKNKMEILARVALDCIEEDKDGRPTMRQVVEMLQSHDCDASGAA 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60553g00001 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 93 184 IPR036426 -
Stsc60553g00001 815 ProSitePatterns Protein kinases ATP-binding region signature. 535 558 IPR017441 GO:0005524
Stsc60553g00001 815 ProSiteProfiles Bulb-type lectin domain profile. 42 164 IPR001480 -
Stsc60553g00001 815 ProSiteProfiles Protein kinase domain profile. 529 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60553g00001 815 FunFam S-receptor-like serine/threonine-protein kinase 498 603 - -
Stsc60553g00001 815 SMART blect_4 44 166 IPR001480 -
Stsc60553g00001 815 SUPERFAMILY Protein kinase-like (PK-like) 507 805 IPR011009 -
Stsc60553g00001 815 Pfam Protein kinase domain 532 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60553g00001 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Stsc60553g00001 815 Gene3D Transferase(Phosphotransferase) domain 1 604 812 - -
Stsc60553g00001 815 Pfam D-mannose binding lectin 92 181 IPR001480 -
Stsc60553g00001 815 ProSiteProfiles EGF-like domain profile. 297 335 IPR000742 -
Stsc60553g00001 815 Gene3D Phosphorylase Kinase; domain 1 496 603 - -
Stsc60553g00001 815 FunFam Serine/threonine-protein kinase 167 294 - -
Stsc60553g00001 815 FunFam Serine/threonine-protein kinase 604 812 - -
Stsc60553g00001 815 Gene3D - 46 165 IPR036426 -
Stsc60553g00001 815 Gene3D - 166 293 IPR036426 -
Stsc60553g00001 815 SMART serkin_6 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60553g00001 815 PIRSF SRK 28 812 IPR024171 GO:0004674
Stsc60553g00001 815 CDD PAN_AP_plant 349 434 - -
Stsc60553g00001 815 ProSiteProfiles PAN/Apple domain profile. 350 436 IPR003609 -
Stsc60553g00001 815 CDD B_lectin 57 166 IPR001480 -
Stsc60553g00001 815 PANTHER OS07G0415500 PROTEIN 38 806 - -
Stsc60553g00001 815 CDD STKc_IRAK 535 805 - -
Stsc60553g00001 815 Pfam S-locus glycoprotein domain 267 332 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60553g00001 Stsc-Chr60553 2248 7181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60553g00001 518 812 Receptor kinase-like Gene Family AT2G28250 40.129 6.22e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc60553g00001 Pkinase 1.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60553g00001 - - gmx:100784287 1038.87