Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60552g00003 ATGACCAAAACATGCACCTTTTCTTTTTCCAATTCCCTGCTTCTACCTCTACTTCTCCTCTTCATAATCACTCCTCTGTCTATAATCACTGCTATTCCAGATTGCAATAATCCAAGTAACGCCCTTTCTTCTCTATCCACAAAATCTTCATCTCCATGGACTTCACCATCCAAGGACTTTGCCTTTGGTTTCCAATTTGTTCAATTCAAGGATCCACGCTATGTCCCTCTCCTTTCCATCTACTTCACCAAAACACCCAACAAGACCATTGTTTGGTACGCGAGCCCCAACCGGGAAATCCCCGTTGGGTCCTCTGTCAATATCACAAACAATAGTCTCGTCATATATGACCCCAAAGGCAGCGAAATTTGGAGTCGTCCGGAAACCAAGGACAAAACGGTAACTTGCGCTTCTATGCAAGATAACGGAAACTTTGTCCTTAAAGACAAAGATGGTAATATAGTTTGGGAGAGTTTTGAAGATCCCAGTGACACACTTCTCCCTGGTCAAAATCTATCAAAGTCTCAGCCATTCCGTTTGCATGCTCGACAATCCGAAACAAATTTCTCTACCAACAATAACTTCAATCTTACCTGGCAAGGCGATGGCAATTTGGTACTTTACTATTCTCAGAACCACCAGCAAGATGAACAAGCTCAGAATTATCCATATTGGTCGACCGGAACCGACGGTCGCGGATCGTTTTTGTTCTTCGACGAGTTCGGAAGCATTTACGTTGTGGATGATAACAATACTAAGCTGGTTCAAGTAACAGCCGGGATCCCGGGTTCAACACAATATTTTTACATGGCGAGAATTGAATCTGATGGAGTTTTCAGGCTCTACAGTTACCAGAAGACTAAAACAACGGTTACAAACGAGGATAGCTGTTCTTCTGGATGGAGAGAGTTGGAGCAAGTTCCTGATGATATATGTGTTCTGAACATAGGTCAAAATGAGAATTTTATCTGTGGGCCCAACAGTTATTGTGTTTCCGTAAATGGAAAGCCTCAGTGTATGTGCCCGGATAATTATTCCTACTTTGTACAACCTAATGATCCAAACAACTTAACTAGTTGTAGGCCGAATTTCCCGCCTCCCAGCTGTTTGACCGACGGCTGGGAGACGGATCCAGCCCAGGTGGACTTCCAGGAACGCTGGAATTTGAACTGGCCTTTCTCGGATTACGAGTTCATGAGCGGGGATTTCGATAAGTACACGTGTCGAGAAAGATGTGGTAGTGATTGCTTCTGCGCTGCGGCTGTGTACTTCCTTGACAAGGACAATGTGGCACATTGTTGGAAGAAGAAGTACCCTTTGAGCAATGGAAGGTATAGTACAAAGGTTGAAAATGGAACAATTGTTTTTCTCAAGTTTCGCAAGCCAGGGTATGGTAACAAGCATCGATCTTATTTGACACTTGTTTTGTCATTTCTTCTTGGGAGCTCTGTTTTCCTTAACATTCTCTTGATATTGGGACTTGTTGGAGTTTTCATGTTCTTGCGCAAGAGAAAGATTTTAGGTCAACAACTGAATGAAAGCTTGGCATCGGAGACAGTTAGAAGGTACACATACAAGGAGCTTGAGAAGGCAACAAGAGGATTCAAACAGAAATTAGGTCAAGGTGCTTTTGGAACTGTGTATAAAGGAGTGTTAGGGTCTGATACAAAGAGATTTGTAGCTATTAAGAAGTTAGATAAGGTGGTTGAAGAAGGGGAGCATCGCCTTCTTGTTTATGAGTACATGAGCAATGGTTCATTGGCGAACTTTCTTTTTGGGATTTCTAGGCCTCATTGGAATCAAAGGGTGCAAATTGGATTGGGAATAGCTAAAGGCCTTACTTATTTGCATGAAGAGTGTAACACTCAATTCATTCATTGCGATATAAAGCCTCAAAACATTCTCTTGGATGACTTATTCGCACCTAGGATATCCGATTTCGGGCTAGCAAAGCTGTTGTTGAGAGAGCAAACTCGAGCCACTAGGACACACGCGAGAGGAACTGTTGGATACTTCGCACCCGAATGGTTCACAAAAGCTTCGGTCACAAGCAAAGTCGATGTTTACAGCTTTGGAGTGGTGCTGCTAGAGCTCATATGCTGCAAATCGAGTATTGTGTTTTCAATGTCGAATGAAGAAGAACAAGCACTCATAGATTGGGCATATGATTGCTATAGACATGGAAAATTGGGTAAGTTTGTTGAGAATGATGAGGAGGCAAAGAATGACATTAGGAGGGTAGAAAAGCATGTTATGGTAGCAATTTGGTGTGTTCAAGATGATCCTTCACTAAGGCCTTCCATGAAGAAGGTTACTCAAATGCTTGAGGACGTTATTGCTGTACCTTTGCCACCTCGACCTTCCATGTTTAGTTCACCATCATCTGCAAGTTCTTCAAATGATGAAATGGTCAAAGTTAAACATGTGAAGAATGTACATGTTGAGAGTGTGGACGAGACGCCTGTATCTGTGACAGGAGACATGAACTGTCGCGGAGCAGTGAAGCGCATGTGGGAACAGTGGATTAGCAGTTATCGCAGGATGCTAATGGCAAATTGA 2559 0.4287 MTKTCTFSFSNSLLLPLLLLFIITPLSIITAIPDCNNPSNALSSLSTKSSSPWTSPSKDFAFGFQFVQFKDPRYVPLLSIYFTKTPNKTIVWYASPNREIPVGSSVNITNNSLVIYDPKGSEIWSRPETKDKTVTCASMQDNGNFVLKDKDGNIVWESFEDPSDTLLPGQNLSKSQPFRLHARQSETNFSTNNNFNLTWQGDGNLVLYYSQNHQQDEQAQNYPYWSTGTDGRGSFLFFDEFGSIYVVDDNNTKLVQVTAGIPGSTQYFYMARIESDGVFRLYSYQKTKTTVTNEDSCSSGWRELEQVPDDICVLNIGQNENFICGPNSYCVSVNGKPQCMCPDNYSYFVQPNDPNNLTSCRPNFPPPSCLTDGWETDPAQVDFQERWNLNWPFSDYEFMSGDFDKYTCRERCGSDCFCAAAVYFLDKDNVAHCWKKKYPLSNGRYSTKVENGTIVFLKFRKPGYGNKHRSYLTLVLSFLLGSSVFLNILLILGLVGVFMFLRKRKILGQQLNESLASETVRRYTYKELEKATRGFKQKLGQGAFGTVYKGVLGSDTKRFVAIKKLDKVVEEGEHRLLVYEYMSNGSLANFLFGISRPHWNQRVQIGLGIAKGLTYLHEECNTQFIHCDIKPQNILLDDLFAPRISDFGLAKLLLREQTRATRTHARGTVGYFAPEWFTKASVTSKVDVYSFGVVLLELICCKSSIVFSMSNEEEQALIDWAYDCYRHGKLGKFVENDEEAKNDIRRVEKHVMVAIWCVQDDPSLRPSMKKVTQMLEDVIAVPLPPRPSMFSSPSSASSSNDEMVKVKHVKNVHVESVDETPVSVTGDMNCRGAVKRMWEQWISSYRRMLMAN 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60552g00003 852 PIRSF SRK 568 825 IPR024171 GO:0004674
Stsc60552g00003 852 PIRSF SRK 8 573 IPR024171 GO:0004674
Stsc60552g00003 852 Gene3D Transferase(Phosphotransferase) domain 1 582 781 - -
Stsc60552g00003 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 186 283 IPR036426 -
Stsc60552g00003 852 SMART blect_4 44 162 IPR001480 -
Stsc60552g00003 852 SUPERFAMILY Protein kinase-like (PK-like) 521 802 IPR011009 -
Stsc60552g00003 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Stsc60552g00003 852 CDD B_lectin 57 162 IPR001480 -
Stsc60552g00003 852 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 570 786 - -
Stsc60552g00003 852 Gene3D - 40 160 IPR036426 -
Stsc60552g00003 852 ProSitePatterns Protein kinases ATP-binding region signature. 539 564 IPR017441 GO:0005524
Stsc60552g00003 852 Pfam D-mannose binding lectin 89 175 IPR001480 -
Stsc60552g00003 852 Gene3D - 161 293 IPR036426 -
Stsc60552g00003 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 782 - -
Stsc60552g00003 852 SMART serkin_6 533 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60552g00003 852 Gene3D Phosphorylase Kinase; domain 1 507 580 - -
Stsc60552g00003 852 ProSiteProfiles Protein kinase domain profile. 474 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60552g00003 852 Pfam Protein kinase domain 566 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60552g00003 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 183 IPR036426 -
Stsc60552g00003 852 ProSiteProfiles Bulb-type lectin domain profile. 39 160 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60552g00003 Stsc-Chr60552 13188 17625 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60552g00003 516 791 Receptor kinase-like Gene Family AT5G38280 37.621 1.48e-57 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc60552g00003 Pkinase 1.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60552g00003 - - ahf:112707732 1351.65