Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60551g00017 ATGATTATCTCGGTATCTGCCTCCTCAGCTTGCAAACAAGTACAAGAGCCCCTAGTAAGTTTCCAAAAGGGGTTTACAAACATGTTCCATCAAAACCAGTACCGGAACAATAATAAGGATAAGGTGGTGGTGATATTGGGGGCCACCGGAACCGGCAAGACCAAGTTGGCCATAGACCTTGCCAACCACTTCCCACCGGCTGAGATTGTTAACTCCGACAAAATGCAAGTCTATGAGGGCCTTGACATCACCACCAATAAGGTTACTCCTGAAGAGGCTCGTGGGGTCCCACATCATCTACTTGGCACAATTGACCCCAATGCCAACTTTACCGCCCTTGATTTTTGCCGCCATGCCACCTCCGCCGTCGATTCCATCGCCGCCCGAGATGCCCTTCCCATCATCGCCGGTGGCTCCAACTCCTATCTCGACGCGCTCATCAACCACCACTCCACTTTTAGACTAAGGTACGAGTGTTGCTTCCTATGGGTGGACGTATCAATCCCGGTCCTCCATTCATCGCTTCGATCGCGCGTGGATCGCATGATCGAAGCAGGGCAATTGGAGGAGGTTCGAAAATTCTTCGAGCCATTCGCAGATTACAACAGGGGAATAAGAAGAGCCATAGGGGTGCCAGAATTCAACGAATTTCTTAGAGCAGAGGCCTTAGGAGCAGATGAAGAGACAAAGAAGATGCTCTTAGACATAGCCATTGCAAGAATCAAGGTCAATAACTGCAACCTCGCGAATCGCCAGATCCAAAAGATTCAACGACTCCACAACACCTGGAAGAGAAGCATGCATCGCCTCGACGCCACCGAGGTTTTCTTGAACCGTAATTGCTCTGATGATCATGAATCTCAAACTTCATGGGAGGAACATGTTCTTGGCAAGAGCCTTGGGATTGTGCACAAGTTCCTGTACGTGGAAGACAGGAATAATAATACTAATAATAAACATGTTGTTGTTCCTGCCGGAATTAATGTTTCTTCTTCTTCGCCGCCGGTGGCAATGGCTGCGGTGGCGGCGGCGACGCATTAG 1041 0.4947 MIISVSASSACKQVQEPLVSFQKGFTNMFHQNQYRNNNKDKVVVILGATGTGKTKLAIDLANHFPPAEIVNSDKMQVYEGLDITTNKVTPEEARGVPHHLLGTIDPNANFTALDFCRHATSAVDSIAARDALPIIAGGSNSYLDALINHHSTFRLRYECCFLWVDVSIPVLHSSLRSRVDRMIEAGQLEEVRKFFEPFADYNRGIRRAIGVPEFNEFLRAEALGADEETKKMLLDIAIARIKVNNCNLANRQIQKIQRLHNTWKRSMHRLDATEVFLNRNCSDDHESQTSWEEHVLGKSLGIVHKFLYVEDRNNNTNNKHVVVPAGINVSSSSPPVAMAAVAAATH 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60551g00017 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 199 IPR027417 -
Stsc60551g00017 346 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 39 307 IPR039657 -
Stsc60551g00017 346 Gene3D - 39 307 IPR027417 -
Stsc60551g00017 346 FunFam Adenylate isopentenyltransferase 5, chloroplastic 168 267 - -
Stsc60551g00017 346 Pfam IPP transferase 76 149 - -
Stsc60551g00017 346 Pfam IPP transferase 155 254 - -
Stsc60551g00017 346 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 168 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60551g00017 Stsc-Chr60551 92339 94664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60551g00017 156 310 C2H2 Transcription Factor Family AT2G27760 30.939 5.27e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60551g00017 K10760 - gmx:100812928 438.728