Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60551g00008 ATGCTGCCTGATCAGAGAAAAAAGTCATCTGTGGAAGTAGACTTCTTTACCGAATATGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTNNNNNNNNNNATTCTCACACTGGAGAAAAGGTTGCAATTAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACTCGCATTCTTCGTGAGATTAAGCTTCTTAGGCTCTTACGTCATCCGGATATTGTGGAGATCAAACATATTTTGTTGCCACCATCTAGAAGGGAATTCAAAGATATATACGTTGTTTTTGAACTCATGGAATCTGATTTGCATCAGGTCATCAAAGCAAATGATGATCTGACACCAGAGCATTACCAGTTTTTCCTCTATCAGCTTCTCCGAGGCTTGAAGTATATACACACAGCAAACGTTTTCCACCGAGACCTAAAGCCAAAAAACATTTTAGCAAATGCTGACTGTAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTTAATGATACACCCACTGCCATATTCTGGACAGATTATGTTGCAACAAGGTGGTATAGGGCCCCTGAGCTGTGTGGATCCTTTTTTTCAAAGTATACGCCAGCGATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAGCCTCTTTTCCCCGGGAAGAATGTTGTCCATCAATTGGATCTCATGACTGATCTTCTTGGAACACCATCTCCTGAAGCCATTGCTAGGGTAAGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGGAAGAAGAAGCCAGTTCCTTTCTCCCAGAAGTTTCCTAATGCAGACCCCCTTGCTCTTCGTTTATTAGAAAGAATGCTGGCCTTTGAGCCGAAAGATCGGCCTACTGCTGAAGAGGCGTTAGCGGATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCTTCTGCCCAGCCAGTTACAAAGATGGAATTTGAGTTTGAGAGACGCAGGATAACAAAGGAAGACGTACGAGAACTTATATACCGTGAGATTCTTGAGTACCATCCCAAGATGTTAAAGGAATTTCTAGAGGGAGCAGAGCCAACAGGTTTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACTGTTGCTCCACCAGAGAGGCAACATGCGTCATTACCCAGGCCATGTGTGTTGTATTCAGATAACTCAGTACAGAATACGGCTGAGGTGGCAAATGATCTATCCAAGTGTTGCATCAAAGAAGTTGAGAAACCACCCATGGATAGTAGGAGCAGCGCTGTCCCTATGACCCGCCTTCCTTTGCAAGCTCCTCAAAATATTCAAGGTGTTGCTGCGAGGCCTGGAAAAGTTGTTGGTTCAGTAATGCGCTACAACAACTGTGGGGTGGCAGTAACAGCAGACACAGAGCAGCGGAGGGTTGTTAGGAATCCAACTGTTTCAGCTCAGTATGCTGCTTCGAGCTGCTCATATCCGAGGAGAAGCAACCCTAGCTGTAAAAATGAGAGGGCGGAAGAAGATGGGATCGAAGGCTCGAATGGACTGCAGCCAAAGCCTCAATACATGGCAAGAAAAGTTGCAGCTGCTCAAGGAGGACCTGGTGGTCAATGGTATTGA 1668 0.4412 MLPDQRKKSSVEVDFFTEYGEGSRYRIEEVIXXXXSHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVAPPERQHASLPRPCVLYSDNSVQNTAEVANDLSKCCIKEVEKPPMDSRSSAVPMTRLPLQAPQNIQGVAARPGKVVGSVMRYNNCGVAVTADTEQRRVVRNPTVSAQYAASSCSYPRRSNPSCKNERAEEDGIEGSNGLQPKPQYMARKVAAAQGGPGGQWY 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60551g00008 555 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 28 331 - -
Stsc60551g00008 555 ProSiteProfiles Protein kinase domain profile. 13 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60551g00008 555 CDD STKc_TDY_MAPK 24 352 - -
Stsc60551g00008 555 FunFam Mitogen-activated protein kinase 16 110 - -
Stsc60551g00008 555 Pfam Protein kinase domain 29 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60551g00008 555 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc60551g00008 555 MobiDBLite consensus disorder prediction 512 555 - -
Stsc60551g00008 555 SUPERFAMILY Protein kinase-like (PK-like) 30 311 IPR011009 -
Stsc60551g00008 555 Gene3D Phosphorylase Kinase; domain 1 39 352 - -
Stsc60551g00008 555 FunFam Mitogen-activated protein kinase 102 330 - -
Stsc60551g00008 555 SMART serkin_6 25 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60551g00008 555 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60551g00008 Stsc-Chr60551 32489 36911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60551g00008 1 555 MAP Kinase Gene Family AT5G19010 78.125 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc60551g00008 Pkinase 1.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60551g00008 - - gmx:100814013 1036.94