Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60551g00005 ATGGCTTCATTTGCTCTCAGAAACACAAATTCTAAGCACTCTCTTCTTCTCTCTAACCCTTCATTATTCCATCGTGCAATTTTCACCCTATCTTCACACTACAGCAGTGATGAATTACCGTATCCATTATTGTCCCTTGTTTCTCTTCGGAGATCCATGGCCACTTTCACTCGAACAAAGCCTCATCTTAATGTGGGAACCATTGGGCATGTTGATCATGGAAAAACCACACTAACTGCTGCAATTACAAAGGTGTTATCCGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAGGAGAAGAAAAGAGGAATAACCATTGCTACAGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCAGCTCAAATGGATGGTGGAATTCTAGTGGTTTCTGCTCCGGATGGGCCTATGCCTCAAACGAAGGAACATATACTGCTTGCTCGACAGGTTGGTGTGCCATCATTGGTTTGTTTTCTAAACAAGGTTGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTTGAGATGGAGCTTCGAGAGCTACTTAGTTTCTACAAATTTCCTGGGGATGAGATCCCGATTGTTCGAGGTTCAGCCCTGTCTGCCTTGCAGGGGACAAATGAAGAACTTGGAAAGAAGGCTATCTTAAAATTAATGGATGCTGTGGATGAATACATTTCTGATCCTGTAAGGCAGCTTGACAGGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACAGGTCGTGTTGAACAAGGCACGATCAAAGTCGGCGAGGAGGTTGAAATATTAGGACTAACACAGGGTGCACCTATGAAGACTACTGTTACTGGTGTGGAAATGTTCAAGAAGATTTTGGATCAAGGGCAAGCTGGTGATAATGTTGGACTACTTCTGCGTGGTCTGAAGCGTGACGATGTACAGCGTGGAATGGTTATCTCCAAGCCTGGCACATTGAAAACATATAAGAAGTTTGAAGCAGAGATCTATGTCCTCTCAAAAGATGAAGGAGGTCGTCATACTGCTTTTTTCTCAAACTATAAGCCTCAGTTTTACTTGAGGACTGCCGATATTACCGGAAAGGTGCAGTTACCCGAAAATGTCAAGATGGTCATGCCTGGTGATAATGTGACTGCAAATTTTGAGCTGATGTCACCTGTTCCTCTTGAAAGAGGACAAAGATTTGCGTTGAGAGAAGGAGGCAGAACTGTAGGTGCAGGAGTGGTCTCCAAAGTGATTGCCTAA 1347 0.4395 MASFALRNTNSKHSLLLSNPSLFHRAIFTLSSHYSSDELPYPLLSLVSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDRPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEILGLTQGAPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKRDDVQRGMVISKPGTLKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVQLPENVKMVMPGDNVTANFELMSPVPLERGQRFALREGGRTVGAGVVSKVIA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60551g00005 448 Pfam Elongation factor Tu domain 2 277 347 IPR004161 GO:0005525
Stsc60551g00005 448 CDD EFTU_II 263 351 IPR033720 -
Stsc60551g00005 448 Pfam Elongation factor Tu C-terminal domain 353 446 IPR004160 -
Stsc60551g00005 448 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 101 116 IPR031157 -
Stsc60551g00005 448 CDD EFTU_III 354 443 - -
Stsc60551g00005 448 Gene3D Translation factors 392 447 - -
Stsc60551g00005 448 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 256 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 PRINTS GTP-binding elongation factor signature 128 138 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 PRINTS GTP-binding elongation factor signature 144 155 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 PRINTS GTP-binding elongation factor signature 181 190 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 PRINTS GTP-binding elongation factor signature 108 116 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 FunFam Elongation factor Tu 258 388 - -
Stsc60551g00005 448 NCBIfam small GTP-binding protein domain 64 199 IPR005225 GO:0005525
Stsc60551g00005 448 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 357 448 IPR009001 -
Stsc60551g00005 448 SUPERFAMILY Translation proteins 257 353 IPR009000 -
Stsc60551g00005 448 Hamap Elongation factor Tu [tuf]. 51 448 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc60551g00005 448 FunFam Elongation factor Tu 51 255 - -
Stsc60551g00005 448 PANTHER ELONGATION FACTOR TU-RELATED 54 447 - -
Stsc60551g00005 448 Gene3D Translation factors 258 388 - -
Stsc60551g00005 448 Pfam Elongation factor Tu GTP binding domain 60 253 IPR000795 GO:0003924|GO:0005525
Stsc60551g00005 448 NCBIfam elongation factor Tu 52 447 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc60551g00005 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 278 IPR027417 -
Stsc60551g00005 448 CDD EF_Tu 61 255 IPR041709 -
Stsc60551g00005 448 Gene3D - 52 255 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60551g00005 Stsc-Chr60551 18861 22598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60551g00005 58 446 Eukaryotic Initiation Factors Gene Family AT5G60390 30.435 2.32e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60551g00005 K02358 - gmx:102667962 746.888