Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00015 ATGGTGATTTCTAATGGGAATATCTCCAACTCAATCAACCCCACAAATCTTCAAGGAGGTTTAGATTATATGGATACAAGAAAAACTGGGGAGAATAGAAGAGCTTTAAGTGTTATCAATCACAATCAGAGTGTGGTGGAAGGTAGACCTTATCCTTGCATTGTTAACAAAAGGGCATTTGCAGGAAAGCATGAAGTTTGTGAGAAGAAGCAGGTGGATCCGGTGCACAGACCCATCACAAGGAGGTTTGCTGCACAAATTGCTTCCACACAACAGTCTCGGGCTGAGGGAGAGAAAAGGTCAAACTTGCCGGTTTCGAATTCCAATGGATTTGGTGATTTTATACTCATTGATGATGAACACAAGTCAAAGGAAGATCAACCAGTGCCAATGTTCCTGGAGCAAACAGGACCATTGGACAGTGATTCATCAGATCAGATGGAGGAAGTTGAAATGGAGGATATAGTTGTTGAAGAGCCTCTTGTGGATATTGATGGCTGTGATGCAAATAATACTCTTGCAGTTGTGGACTATATTGAAGAACTTTATGCCCATTACAGAAAAATGGAGAGTGCAAGTTGTGTCTCGCCGAATTATATGGCGCAACAATTTGACATTAACGAAAGGATGAGGGCTATACTGATTGACTGGCTAATTGAGGTGCATGATAAATTTGAGCTCATGCATGAGACATTGTTCCTTACGGTTAACCTCATAGATAGATTCTTGGAAAAGCAGACAGTTGTAAGAAAGAAGCTTCAGTTGGTTGGTCTGGTTGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTTGGTGATTTGATCCTTATATCAGACAAAGCATATACAAGGAATGAAGTTCTGGATATGGAGAAGTTGATGCTGAACACATTGCACTTTAACATGTCTGTGCCAACATCATATGTTTTCATGAAAAGGTTCCTAAAGGCAGCACAAGCAGACAGAAAGCTTGAGCTACTAGCTTTCTTCTTGATAGAGCTATCTCTAGTGGAGTATGAGATGCTTAAGTTCTCGCCGTCTTTGCTAGCCGCAGCTGCAGTCTATACAGCTCAATGCACCATCTTTGGCTTCAAACAGTGGAGCAGGACATGTGAATGGCATACCAACTACACACAAGAGCAATTATTAGAGTGCTCGAGTTTAATGGTTGGTTTCCACCAGAAGGCAGGGTCAGGGAAACTTACAGGGGTGCATAGGAAGTATTGCTCATCAAAGCACAACTACACTGCAAAATGTGAAGCAGCAAGTTTTCTTCTTGATAACTCATTGTTGTAG 1308 0.4167 MVISNGNISNSINPTNLQGGLDYMDTRKTGENRRALSVINHNQSVVEGRPYPCIVNKRAFAGKHEVCEKKQVDPVHRPITRRFAAQIASTQQSRAEGEKRSNLPVSNSNGFGDFILIDDEHKSKEDQPVPMFLEQTGPLDSDSSDQMEEVEMEDIVVEEPLVDIDGCDANNTLAVVDYIEELYAHYRKMESASCVSPNYMAQQFDINERMRAILIDWLIEVHDKFELMHETLFLTVNLIDRFLEKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRNEVLDMEKLMLNTLHFNMSVPTSYVFMKRFLKAAQADRKLELLAFFLIELSLVEYEMLKFSPSLLAAAAVYTAQCTIFGFKQWSRTCEWHTNYTQEQLLECSSLMVGFHQKAGSGKLTGVHRKYCSSKHNYTAKCEAASFLLDNSLL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00015 435 Pfam Cyclin, N-terminal domain 182 307 IPR006671 -
Stsc60550g00015 435 ProSitePatterns Cyclins signature. 211 242 IPR006671 -
Stsc60550g00015 435 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60550g00015 435 Pfam Cyclin, C-terminal domain 309 423 IPR004367 -
Stsc60550g00015 435 Gene3D - 195 307 - -
Stsc60550g00015 435 SMART Cyclin_C_2 309 426 IPR004367 -
Stsc60550g00015 435 CDD CYCLIN_AtCycB-like_rpt2 309 424 - -
Stsc60550g00015 435 SUPERFAMILY Cyclin-like 308 425 IPR036915 -
Stsc60550g00015 435 FunFam G2/mitotic-specific cyclin-1 293 421 - -
Stsc60550g00015 435 SMART cyclin_7 313 395 IPR013763 -
Stsc60550g00015 435 SMART cyclin_7 216 300 IPR013763 -
Stsc60550g00015 435 SUPERFAMILY Cyclin-like 170 306 IPR036915 -
Stsc60550g00015 435 CDD CYCLIN_AtCycB-like_rpt1 158 304 - -
Stsc60550g00015 435 Gene3D - 182 421 - -
Stsc60550g00015 435 MobiDBLite consensus disorder prediction 1 25 - -
Stsc60550g00015 435 PANTHER CYCLINS 132 406 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00015 Stsc-Chr60550 85695 89064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60550g00015 1 430 Core Cell Cycle Gene Families AT1G20610 56.452 1.13e-169 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00015 K21777 - gmx:100779889 681.789