Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00013 ATGGGAGGTGAAGGTGCTGTGGAGGATTTCAAGCCCAACACCACCGAAGAGGGAGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGTCAACATTAACATTCGATGTTCTAACGGTTCAAAGTTCTCAGTTTCAATTGGTCTTGATTCCACCGTCGTCTCTTTCAAGGAGGTTGTAGCTCGCAGTTGTGACATCCCTGCTAACCAACAGCGCCTGATTTACAAAGGTCGCATCCTCAAGGACGATCAAACTCTCCAGAGCTACGGTTTGGAGGCAGACCACACTGTCCATTTGGTTCGTGGCTTTGCACCTTCGGCTACCACTGGTGCGACCAATACAACTGGTGCTAACAGCACAGCTAATACGAGAGGTGCTGGTGCTACTGAGGGTGGGGGCTTAGGAGCCTCGCCTTTCCCTGGGCTAGGACTTGGTGGGATGGGAGGCAATGGCCTCAATAGCTTATTTGGGAATTTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAACTAGCACATATACTTAATGATCCCAGCACTCTTCGCCAAACGCTTGAAGCTACGAGGAATCCTGAGATCATGCGTGAGATGATGAGGAATACGGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTACGAAAATGTTCAAGAACCCTTTCTAAATGCCACCACTATGACTGGTAATACAGGAAATGAACAAGTTAGAAACCAAGCAACAAATCCCTCAACTAATAGTTCTGAGGCAAGTTCCCCCGTGCCCAATACTAACCCACTTCCCAATCCTTGGTCATCTGCTGCGACTGGAGGTGCCCAAAATACCACTAGAAGATCAACTACCGGTGTGGATGCTCGACAGCAACCGACCACTGGCTTAGCTGGGGCTGGTCTGCCCGATCTTGATGGTATGTTGGGTGGAATGCCAGATGCTGCTTTACTCACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTCTCCAATCCACAGACTATGAACCAGATTCTTGGAGTTAATGCTGAGCAGCGGGGCATGCCTGATTTAAATTCTCTCAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCCTATTTTCCTCACCAGAGACCCTGCAGCAACTTATGTCTTTCCAGCAAGCTCTCTTGTCCCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCCCTGGACCGATGAACAACTTGAGTTTGGAAATGTTATCGAGCATGTTTGGCGGACTTGGAGCTGGCAGCCTAGCTGTTCCAAACAGATCAAATGAACCACCGGAGCAGCTCTATGCTACCCAACTCTCCCAGCTTCAAGAGATGGGATTTTTCGACACACAAGAAAACATAAGGGCTCTTATTGCCACATCGGGGAATGTTCATGCAGCCGTTGAGCGCCTTTTGGGTAACTCTGGACAGTAG 1527 0.4859 MGGEGAVEDFKPNTTEEGGGGGGGGGGGGGGVNINIRCSNGSKFSVSIGLDSTVVSFKEVVARSCDIPANQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSATTGATNTTGANSTANTRGAGATEGGGLGASPFPGLGLGGMGGNGLNSLFGNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNTGNEQVRNQATNPSTNSSEASSPVPNTNPLPNPWSSAATGGAQNTTRRSTTGVDARQQPTTGLAGAGLPDLDGMLGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQSTQEPGQTGGGPGPMNNLSLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00013 508 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Stsc60550g00013 508 MobiDBLite consensus disorder prediction 248 312 - -
Stsc60550g00013 508 CDD UBA_PLICs 466 504 - -
Stsc60550g00013 508 SMART uba_6 466 504 IPR015940 -
Stsc60550g00013 508 MobiDBLite consensus disorder prediction 107 127 - -
Stsc60550g00013 508 SUPERFAMILY Ubiquitin-like 23 120 IPR029071 -
Stsc60550g00013 508 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 460 505 IPR015940 -
Stsc60550g00013 508 SMART CBM 367 402 IPR006636 -
Stsc60550g00013 508 SMART CBM 322 364 IPR006636 -
Stsc60550g00013 508 SMART CBM 174 213 IPR006636 -
Stsc60550g00013 508 MobiDBLite consensus disorder prediction 1 27 - -
Stsc60550g00013 508 Gene3D - 448 508 - -
Stsc60550g00013 508 FunFam Ubiquitin domain-containing protein DSK2b 29 115 - -
Stsc60550g00013 508 Pfam Ubiquitin family 34 101 IPR000626 GO:0005515
Stsc60550g00013 508 Gene3D - 169 227 - -
Stsc60550g00013 508 Pfam UBA/TS-N domain 466 502 IPR015940 -
Stsc60550g00013 508 SMART ubq_7 32 103 IPR000626 GO:0005515
Stsc60550g00013 508 MobiDBLite consensus disorder prediction 413 435 - -
Stsc60550g00013 508 PANTHER UBIQUILIN 32 503 IPR015496 -
Stsc60550g00013 508 MobiDBLite consensus disorder prediction 107 134 - -
Stsc60550g00013 508 FunFam Ubiquitin domain-containing protein DSK2b 171 227 - -
Stsc60550g00013 508 CDD Ubl_Dsk2p_like 32 104 - -
Stsc60550g00013 508 FunFam Ubiquitin domain-containing protein DSK2b 449 507 - -
Stsc60550g00013 508 SUPERFAMILY UBA-like 462 504 IPR009060 GO:0005515
Stsc60550g00013 508 Gene3D - 30 117 - -
Stsc60550g00013 508 MobiDBLite consensus disorder prediction 248 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00013 Stsc-Chr60550 66704 71103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60550g00013 32 101 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.18e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00013 K04523 - gmx:100797539 713.761