Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00008 ATGGGTAATTGCCTTGCTTCAATACCAACACATGAACCACACTCTAATAACATCAACAACCCTCCTCATTATTCTTCTTCAGGTTCGTCGACCAGTTACAATGACGAGAGCAAGAAGGTGGAATCATCAACAACCGATGATATAACAAGTAGTCGAGGAATTAGTCATCGGACTTCGGCTTCAGAGGTTTCGAGTTTGGGTGGAAGCTTCGGTGGATCGATCATAACTCACAGTGGACAGATTCTTGAGACTCCGAATCTAAGAGTGTTTAGTTTGGCGGGATTGAAAGTAGCAACGAAGAACTTCAAGGCGGATGCAATGTTGGGAGAAGGTGGATTTGGAAAGGTCTATAAAGGTTGGTTGGATCATAGAACGCTCTCTCCGGTGAAAGCCGGTTCCGGCATGGTCGTCGCCGTCAAGAGACTCAACACCGAGAGCGTTCAAGGATTTCAAGAATGGAAGTCAGAAGTGAGCTTTTTAGGCAGGGTTTCACACCCAAATCTGGTTAAGCTTTTGGGTTATTGCAGAGAAGCTGATGAACTTCTTCTTGTCTACGAGTTCATGCCTAAGGGAAGCTTGGAGACCCATCTCTTCAGAAGAAATTCTAGTACAGAACCAATCTCTTGGAACACACGTCTCAAAATAGCTATTGATGCAGCTAGAGGCTTAGCTTTTTTGCACACTTCAGAAAAACAAGTTATATATAGAGATTTTAAGGCCTCCAATATACTATTAGATGGGAATTACAATGCGAAAATTTCGGATTTTGGATTAGCTAAATTGGGTCCTATCGGAGGAGAATCACATGTGAGTACCAGAATCATGGGCACATATGGTTATGCCGCTCCAGAATACATAGCAACCGGTCATTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTGCTTGAAATGCTGACAGGGTTGAGAGCACTTGACACAAAGAGACCAACAAATCAGCAGAATCTTGTTGAATGGAAGAGACATTATCTATCTGATAAGAAGAACATTCATAAGAACATTATGGATCCAAGACTTGAGGGTCAATACCCACTTAAAGCTGCAATACAAGCTGCTCAACTTACCTTAAATTGCCTTCAATCTGTTCATAGAAACCGCCCTTCTATGAATGAAGTCTTGAAGTCTTTGGAAGCCATTGCCGCTATCAAACATAGAACCAAAAAGAAGCCTGCCAACAAATTAAATTAG 1215 0.4206 MGNCLASIPTHEPHSNNINNPPHYSSSGSSTSYNDESKKVESSTTDDITSSRGISHRTSASEVSSLGGSFGGSIITHSGQILETPNLRVFSLAGLKVATKNFKADAMLGEGGFGKVYKGWLDHRTLSPVKAGSGMVVAVKRLNTESVQGFQEWKSEVSFLGRVSHPNLVKLLGYCREADELLLVYEFMPKGSLETHLFRRNSSTEPISWNTRLKIAIDAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPIGGESHVSTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDTKRPTNQQNLVEWKRHYLSDKKNIHKNIMDPRLEGQYPLKAAIQAAQLTLNCLQSVHRNRPSMNEVLKSLEAIAAIKHRTKKKPANKLN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00008 404 Pfam Protein tyrosine and serine/threonine kinase 104 385 IPR001245 GO:0004672|GO:0006468
Stsc60550g00008 404 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Stsc60550g00008 404 PANTHER OS01G0588500 PROTEIN-RELATED 41 388 - -
Stsc60550g00008 404 ProSiteProfiles Protein kinase domain profile. 102 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60550g00008 404 Gene3D Transferase(Phosphotransferase) domain 1 188 403 - -
Stsc60550g00008 404 FunFam Serine/threonine-protein kinase PBS1 188 403 - -
Stsc60550g00008 404 CDD STKc_IRAK 108 388 - -
Stsc60550g00008 404 MobiDBLite consensus disorder prediction 9 38 - -
Stsc60550g00008 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Stsc60550g00008 404 MobiDBLite consensus disorder prediction 1 62 - -
Stsc60550g00008 404 FunFam Serine/threonine-protein kinase BIK1 71 187 - -
Stsc60550g00008 404 MobiDBLite consensus disorder prediction 46 62 - -
Stsc60550g00008 404 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Stsc60550g00008 404 SUPERFAMILY Protein kinase-like (PK-like) 78 385 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00008 Stsc-Chr60550 35772 39130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60550g00008 88 385 Glycoside Hydrolase AT3G07070 50.167 1.15e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60550g00008 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00008 - - qsa:O6P43_033520 511.916