Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00007 ATGGGTAATTGCCTTGCTTCAATACCAACACATGAACCACACTCTAATAACATCAACAACCCTCCTCATTATTCTTCTTCAGGTTCGTCGACCAGTTACAATGACGAGAGCAAGAAGGTGGAATCATCAACAACCGATGATATAACAAGTAGTCGAGGAATTAGTCATCGGACTTCGGCTTCAGAGGTTTCGAGTTTGGGTGGAAGCTTCGGTGGATCGATCATAACTCACAGTGGACAGATTCTTGAGACTCCGAATCTAAGAGTGTTTAGTTTGGCGGGATTGAAAGTAGCAACGAAGAACTTCAAGGCGGATGCAATGTTGGGAGAAGGTGGATTTGGAAAGGTCTATAAAGGTTGGTTGGATCATAGAACGCTCTCTCCGGTGAAAGCCGGTTCCGGCATGGTCGTCGCCGTCAAGAGACTCAACACCGAGAGCGTTCAAGGATTTCAAGAATGGAAGTCAGAAGTGAGCTTTTTAGGCAGGGTTTCACACCCAAATCTGGTTAAGCTTTTGGGTTATTGCAGAGAAGCTGATGAACTTCTTCTTGTCTACGAGTTCATGCCTAAGGGAAGCTTGGAGACCCATCTCTTCAGAAGAAATTCTAGTACAGAACCAATCTCTTGGAACACACGTCTCAAAATAGCTATTGATGCAGCTAGAGGCTTAGCTTTTTTGCACACTTCAGAAAAACAAGTTATATATAGAGATTTTAAGGCCTCCAATATACTATTAGATGGGAATTACAATGCGAAAATTTCGGATTTTGGATTAGCTAAATTGGGTCCTATCGGAGGAGAATCACATGTGAGTACCAGAATCATGGGCACATATGGTTATGCCGCTCCAGAATACATAGCAACCGGTAATTAA 873 0.4307 MGNCLASIPTHEPHSNNINNPPHYSSSGSSTSYNDESKKVESSTTDDITSSRGISHRTSASEVSSLGGSFGGSIITHSGQILETPNLRVFSLAGLKVATKNFKADAMLGEGGFGKVYKGWLDHRTLSPVKAGSGMVVAVKRLNTESVQGFQEWKSEVSFLGRVSHPNLVKLLGYCREADELLLVYEFMPKGSLETHLFRRNSSTEPISWNTRLKIAIDAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPIGGESHVSTRIMGTYGYAAPEYIATGN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00007 290 SUPERFAMILY Protein kinase-like (PK-like) 78 288 IPR011009 -
Stsc60550g00007 290 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Stsc60550g00007 290 FunFam Serine/threonine-protein kinase BIK1 71 187 - -
Stsc60550g00007 290 Gene3D Transferase(Phosphotransferase) domain 1 188 290 - -
Stsc60550g00007 290 MobiDBLite consensus disorder prediction 9 38 - -
Stsc60550g00007 290 FunFam Os07g0541700 protein 188 277 - -
Stsc60550g00007 290 ProSiteProfiles Protein kinase domain profile. 102 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60550g00007 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Stsc60550g00007 290 MobiDBLite consensus disorder prediction 1 62 - -
Stsc60550g00007 290 MobiDBLite consensus disorder prediction 46 62 - -
Stsc60550g00007 290 Gene3D Phosphorylase Kinase; domain 1 74 187 - -
Stsc60550g00007 290 PANTHER OS01G0588500 PROTEIN-RELATED 40 289 - -
Stsc60550g00007 290 Pfam Protein tyrosine and serine/threonine kinase 104 288 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00007 Stsc-Chr60550 35772 39130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60550g00007 88 290 Glycoside Hydrolase AT3G07070 52.451 4.35e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60550g00007 PK_Tyr_Ser-Thr 7.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00007 - - qsa:O6P43_033520 377.481