Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00006 ATGGGTAATTGCCTTGCTTCAATACCAACACATGAACCACACTCTAATAACATCAACAACCCTCCTCATTATTCTTCTTCAGGTTCGTCGACCAGTTACAATGACGAGAGCAAGAAGGTGGAATCATCAACAACCGATGATATAACAAGTAGTCGAGGAATTAGTCATCGGACTTCGGCTTCAGAGGTTTCGAGTTTGGGTGGAAGCTTCGGTGGATCGATCATAACTCACAGTGGACAGATTCTTGAGACTCCGAATCTAAGAGTGTTTAGTTTGGCGGGATTGAAAGTAGCAACGAAGAACTTCAAGGCGGATGCAATGTTGGGAGAAGGTGGATTTGGAAAGGTCTATAAAGGTTGGTTGGATCATAGAACGCTCTCTCCGGTGAAAGCCGGTTCCGGCATGGTCGTCGCCGTCAAGAGACTCAACACCGAGAGCGTTCAAGGATTTCAAGAATGGAAGTCAGAAGTGAGCTTTTTAGGCAGGGTTTCACACCCAAATCTGGTTAAGCTTTTGGGTTATTGCAGAGAAGCTGATGAACTTCTTCTTGTCTACGAGTTCATGCCTAAGGGAAGCTTGGAGACCCATCTCTTCAGAAGTATATATAATCTCATCATTAAACTATCAATAATTACATTCATTAATTTCAAATTTCATTTATTGAGTTTATTAATATGTTTCTTCTTGCCCATCAGGAAATTCTAG 705 0.4199 MGNCLASIPTHEPHSNNINNPPHYSSSGSSTSYNDESKKVESSTTDDITSSRGISHRTSASEVSSLGGSFGGSIITHSGQILETPNLRVFSLAGLKVATKNFKADAMLGEGGFGKVYKGWLDHRTLSPVKAGSGMVVAVKRLNTESVQGFQEWKSEVSFLGRVSHPNLVKLLGYCREADELLLVYEFMPKGSLETHLFRSIYNLIIKLSIITFINFKFHLLSLLICFFLPIRKF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00006 234 Pfam Protein tyrosine and serine/threonine kinase 104 200 IPR001245 GO:0004672|GO:0006468
Stsc60550g00006 234 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Stsc60550g00006 234 FunFam Serine/threonine-protein kinase BIK1 71 187 - -
Stsc60550g00006 234 ProSiteProfiles Protein kinase domain profile. 102 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60550g00006 234 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Stsc60550g00006 234 MobiDBLite consensus disorder prediction 1 62 - -
Stsc60550g00006 234 PANTHER OS01G0588500 PROTEIN-RELATED 40 208 - -
Stsc60550g00006 234 MobiDBLite consensus disorder prediction 46 62 - -
Stsc60550g00006 234 SUPERFAMILY Protein kinase-like (PK-like) 78 205 IPR011009 -
Stsc60550g00006 234 MobiDBLite consensus disorder prediction 9 38 - -
Stsc60550g00006 234 SMART tyrkin_6 102 234 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00006 Stsc-Chr60550 35772 39130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60550g00006 90 198 Receptor kinase-like Gene Family AT3G55550 54.128 1.09e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60550g00006 PK_Tyr_Ser-Thr 2.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00006 - - qsa:O6P43_033520 219.164