Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00005 ATGGATTCCTCACTCACCATCCTTTTAGTCTTCAACAACACCATCCAACCAGAGTTGTTCAGGAGCGTGCATGTGTATTGCCGAAAATTATTGGATGGGGACGAAAGGGAAGAAGCTGTAGTTGAGAGAGAGTTTGTGCTGTCTCAGAGTGGCTCCTACATGGAAATGAACTGCACACCAATTCTCACATCACTTAATCTTTGTGTTGCTGATGTTTGTGAAGGTTACAAGAATGGTGTTTGGCTTTGTGTCTTTGCCTTTCATGCTCATCACACGCCTCAATTCAAACACATTCCTTCAATTTTGTTGCTCACCAGAAACTCAAAACTCAAGGCAATTCCCAACTTGCTTAATGATCTCCAGATTATATACAAGCTGGAACTGAAAGCAGAAGTTGATGATGATCTGCCAGATTCTGCAAAGCAAGAATCGCAGAGAAACGGCTATGGTAACCAATCACCTCAGAAAGTCTTGCCTGTATTTGATCAGGATCTAAATTGCCTTCCTTTTGATGAAGGCACGACTGAGTTGATCGACGACAAGACAAATGTTGAAAGCTTACCAGGTTTTGCAGCAAAGAAAAGGAGGGCGCAAAGTGACCACATAGCGAAACTTGCTTTACCAGATTTGGTCAAGTACTTTGATTTGCCAATTGTAGAAGCATCAAGAAGTCTGAATATTGGGCTTACAGTTCTCAAGAGAAAGTGCAGAGAATTCGGTATTCCCCGCTGGCCACACAGGAAGATAAAATCACTTGACAATCTCATTCACGATCTTGAGGAAGAGGCGAAACACCAAGAATCAAAGGACAAGGTGGTGGCAATGGGGATGGTGAAGAGGCAAAGGATGTTGGAATGCGAAAAGGAAAACATAGAGAAGAAACCTTTCATGGACATACAAACTGAGACCAAGAGATTCAGGCAAGATATGTTCAAGAGAAGGTACAGAGCTAGAGCTGTTGAAAGACAAAGTTCTTCAGTCTCAAGCACTTAG 993 0.425 MDSSLTILLVFNNTIQPELFRSVHVYCRKLLDGDEREEAVVEREFVLSQSGSYMEMNCTPILTSLNLCVADVCEGYKNGVWLCVFAFHAHHTPQFKHIPSILLLTRNSKLKAIPNLLNDLQIIYKLELKAEVDDDLPDSAKQESQRNGYGNQSPQKVLPVFDQDLNCLPFDEGTTELIDDKTNVESLPGFAAKKRRAQSDHIAKLALPDLVKYFDLPIVEASRSLNIGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLEEEAKHQESKDKVVAMGMVKRQRMLECEKENIEKKPFMDIQTETKRFRQDMFKRRYRARAVERQSSSVSST 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00005 330 Coils Coil 249 269 - -
Stsc60550g00005 330 PANTHER PROTEIN RKD4 99 323 IPR044607 GO:0003700
Stsc60550g00005 330 Pfam RWP-RK domain 205 252 IPR003035 -
Stsc60550g00005 330 ProSiteProfiles RWP-RK domain profile. 187 272 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00005 Stsc-Chr60550 29391 32036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60550g00005 15 330 AtRKD Transcription Factor Family AT4G35590 43.582 1.66e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc60550g00005 RWP-RK 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00005 - - gmx:113001653 422.165