Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60550g00002 ATGCCGAAGGTCAAGTCTAACGTCAAAGCTGCTGACAACAGGTTGAGCCGCAAGGACGTTGGAATCGGAACGAAGCAGGCGAAGAAGAAAGCTGCTGCGAAGGATCCGAACAAGCCTAAGAGGCCTCCGTCTGCATTCTTCGTTTTCATGTCTGACTTCAGAGAGGAGTATAAGAAGGAGAATCCGAACAACAAATCCGTTGCTGTTGTTGGCAAAGCTGGTGGTGCCAGGTGGAAGTCCATGTCCGATGCTGAAAAAGCTCCATACCATGCAAAAGCTGAGAAGAGCAAACTAGCCTATGAGGAGGATGTGAGGGCCTACACCAAAGGATTGGATGAAGGTGGATATTCTGACAAGTCGAAATCTGAGGTGCATGACTATGATGATGATGAAGAGGAGGATGAGTGA 408 0.4853 MPKVKSNVKAADNRLSRKDVGIGTKQAKKKAAAKDPNKPKRPPSAFFVFMSDFREEYKKENPNNKSVAVVGKAGGARWKSMSDAEKAPYHAKAEKSKLAYEEDVRAYTKGLDEGGYSDKSKSEVHDYDDDEEEDE 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60550g00002 135 Pfam HMG (high mobility group) box 39 107 IPR009071 -
Stsc60550g00002 135 MobiDBLite consensus disorder prediction 109 135 - -
Stsc60550g00002 135 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 133 IPR031061 -
Stsc60550g00002 135 MobiDBLite consensus disorder prediction 10 37 - -
Stsc60550g00002 135 CDD HMG-box_AtHMGB1-like 40 100 - -
Stsc60550g00002 135 MobiDBLite consensus disorder prediction 1 44 - -
Stsc60550g00002 135 Gene3D High mobility group box domain 23 128 IPR036910 -
Stsc60550g00002 135 SMART hmgende2 38 109 IPR009071 -
Stsc60550g00002 135 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 39 108 IPR009071 -
Stsc60550g00002 135 MobiDBLite consensus disorder prediction 109 126 - -
Stsc60550g00002 135 SUPERFAMILY HMG-box 25 109 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60550g00002 Stsc-Chr60550 16468 18138 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc60550g00002 HMG_box 4.2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60550g00002 K25507 - aip:107641626 216.468