Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60549g00007 ATGGCACTGTGCAGCCGAATCAGATCGGGGATTTCACTCTTTAACAAATTAGGATTTGCCGCTTCCCAGAGATCCACTCTCCAACGATCTCTCATTGCCCCTTCCTCTTCCCTGGTCTCCAGAGGTTATGCCAATGTGCCAGGTTCAAGGGAAAGCAAAGTTAAGGTCCCACTGGCTATGTTTGGTGGCTCAGGAAACTATGCCACTGCTTTGTATATTGCAGCAGTGAAAGCTAATTCAGTGGATAAGGTTGAGTCTGAGATTCTTCAGTTTGTTGAGGCGGTTAAGAATAGTACTAAAGTTTCACATTTCATAAGTGACGTGTCTGTGAAGAAAGATATTAGAGTAAAGGTTATTGAAGACATTGCTGGTCAATCTAAGTTTTCTGATATTACGAAGAACTTCCTTGTCATTGTTGCTGAGAATGGGAGGCTTAAAAACATTGAGACTATTGCAAAGAGGTATAGGGAGTTGGCAATGGCATACAAGGGAGAAGTGAAAGCCATTGTGACAACAGTCATTCCTCTCCCTGCTGAGGAAGAAAAGGCACTAAAGGAGACCCTTCAGCAGATGTTGGGCACTGGGGCCAAGGTTCATCTTGAGCAGAAGATTGATCCAAGTATACTTGGTGGATTAGTGTTGGAATTTAGCCAGAAGGTCTTTGATATGTCTATTAAGACTCGGGCGCTACAGATGGAGAGGCTTCTTCGTGAGCCCATCAGTATCGCTGACATCTAG 738 0.4417 MALCSRIRSGISLFNKLGFAASQRSTLQRSLIAPSSSLVSRGYANVPGSRESKVKVPLAMFGGSGNYATALYIAAVKANSVDKVESEILQFVEAVKNSTKVSHFISDVSVKKDIRVKVIEDIAGQSKFSDITKNFLVIVAENGRLKNIETIAKRYRELAMAYKGEVKAIVTTVIPLPAEEEKALKETLQQMLGTGAKVHLEQKIDPSILGGLVLEFSQKVFDMSIKTRALQMERLLREPISIADI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60549g00007 245 Hamap ATP synthase subunit delta [atpD]. 59 238 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 Pfam ATP synthase delta (OSCP) subunit 65 234 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 PANTHER ATP SYNTHASE DELTA CHAIN 40 238 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 Gene3D - 63 156 IPR026015 -
Stsc60549g00007 245 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 64 164 IPR026015 -
Stsc60549g00007 245 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 198 217 IPR020781 GO:0015986|GO:0016020|GO:0046933
Stsc60549g00007 245 PRINTS ATP synthase delta subunit signature 211 229 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 PRINTS ATP synthase delta subunit signature 144 158 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 PRINTS ATP synthase delta subunit signature 196 211 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 PRINTS ATP synthase delta subunit signature 63 82 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 PRINTS ATP synthase delta subunit signature 133 144 IPR000711 GO:0015986|GO:0046933
Stsc60549g00007 245 NCBIfam ATP synthase F1 subunit delta 66 235 IPR000711 GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60549g00007 Stsc-Chr60549 77956 82820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60549g00007 79 245 Primary Pumps ATPases AT5G13450 50.581 4.36e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60549g00007 K02137 - gmx:100790990 381.719