Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60546g00009 ATGCTACAGAGCAAACCAGCTGCTAAGGGTGATGTAGATGTTACAAAATGTAAATCAGCAACTGGAGACAGTAATGTTGCAAAAGAGGTGGCCGTAGGTAAGGCAGTTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCAAACAGGCTTGTGGTTACAACACCATCAATCGGTGCTTTGTATCCCTTACATCCTGAAGAAATGTCAAAAGACTTAATATCTGCTGACATGGATATTTCGGATTCATTATCAAAGCTGGACCAAAAGGATCCTCGTACTTTACTGCAGTTTCATATTTTGCAGTTGCTTACAGCAGCAGGATGGTCTATTGAGAAGCGTAAACGCCCTAGTAGGCGATACATTGAATCAGTTTATAGGACTCCAGAAGGAAAAACTGTCCGGGAATTTACAAAAGCTTGGAGATTATGTGGTCAGCTTCTGTCTGTTGAAAAATGTAATTTAACATATGAAGAGTGTAAGGAATGGACTGATATTAGTCAATTCTGGTTTGATTTGTCCGTTGCTCTGATAAATGTTGAAAAAGGAATGAACCAGTTAGAGACTGCTTCTATGTTGGCTTATCGATGGTGGGTATTGGATCCTTTTGTAGTAGTAATTTTTTTTAATAGAAAGATTGGTGCGCTGAAAAAGGGAGAAGTAGTCAAATCAACTCGAACTGTAGTTTCGGGTAACAATGCTTGTAAACGGAAATCTGCTGAAGATATATATGTTGTAGCAAATCCCAACAGCATAGGAAATCAATGTAGAAAAATCTCTGTAAACAAAAATAGTATGGATCTAGTTTCCTCACCTGGTTACAGATTAGATAGCAGTGGTACTCAGCAAAGTCCTTGCTCTTTTGATATTCTTACAAGTTCGGGAAATTCAGTACAGTTGCTTGAAGGGTCTAAAGTAAATGATGTTCTCCAAGCTAAAGTTGGAAATTCCCAAAGGGTTAATGAAGATATTGGGATTGAGGGAGGTGTACTAATGGAAATGCCAGAGGAAAAGAATGCATCTGAAGTAAGCCTTGCGCTGGTTCATTATCATGAATCTGAGGCTATTCAACAGTCTAATTATAGTGATGGAGAGGGCAGGAGAATCTCAATAGCTTCTGTATCTGAGACAGATAAGACGTGTTCTGCCACCAGTGTTATTCTTAAGAAGAAAACGAGGAGGAGGGGGAAAAGGGTATCTCAGATCAAACTGAGTATGTTGTACCGTAGCGACATGGAGGGGTCAACTGTTACTGAGCAGATGCAGTCACTGAATGGTGGTCCAAGTGGAACTCAGTTGGCGTTGGAAGAGGCTCACGATGATCTAGTAGACAATTCAGGAACTAAAAGAAGCTGCAGGAAGTTATCATCTGGCAGTGCATCCCAGCAACATATTAGGAAAACAAACTACTCCCTGAACGGAATGAATAAGTCCAGTAGATGCCAGATTAAAGATGATGATCTGTTGGTCTCTGCAATATTCAAGAACAAGGATTCTGGCCCAAATTCAATCCGGGGTAATTCTAGAGCTAAATCCAGCAAATTGAGAGGCCGGAGAAAGCTTAAAAGCCAAAAGGGCCGATGTCGGTTGCTACCAAGGAATCTTTGCAATGGAGGGAATCACAATAAGGATGGCAAGAGGTATTATTTGGGGTCAAGGACAGTCTTGTCCTGGTTGATTGATAATGGTGTGATATCTATAAATGATGTGATTCAATACCGAAGCCCTAAAGATGATGCTGTCATTAAGGATGGTAGGATTACCAAAGATGGAGTTATGTGCAAGTGTTGTTCTAGTGTTTTTACATTATCAGAGTTCAAATTTCATGCTGGTTTTGCACTGAATCGTCCCTGCTTGAATCTTTTCATGGAGTCTGGTGAGCCTTTTACACTCTGCCTCCTTCAAGCTTGGTCTTCTGAGTACAAAGCCAGGAAAAGTCAGAATCAAGCTGCGAAAGTTGATAATGATGACAAAAATGATGATTCATGTGGGCTATGTGGGGAGGGGGGTGAGCTGATTTGTTGTGATAACTGTCCGTCTACTTTTCATCTGACTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCGCAAACTGCACTTGTCGGATATGTGGAAATTTGGTCATGGACAAGGAGGCTTCCGATGTGTGTGATTCATTGCAATGTTCACAATGTGAACATAAATATCATGATAAATGCCTGAAAGAAAGAGAGAAACAAGAAGGGTTTCTTCTAGATACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTATACACTGGTCTCCAATCTCAAGTGGGGTTAGTCAATCATGTTTCCAATGGCTTCTCATGGATGCTTCTTAGATGCATCCATGATGATCAAAAGGTTCATTCTGCCCAGTGGTTAGCCCTAAAGGCAGTATGCAATACAAAGTTAGCTGTTGCGCTTACTATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCTAGAACAGGCATACACATGATACCCCAACTTCTATACAACTGGGGGTCTGATTTTGCTCGCCTAAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAGCAGGATGTATTAACATCTGTAGCATGTATTAGGGTGCATGGAACTACAGTTGCTGAGATGCCTCTCATTGCCACTTGCAGTCGGTTTCGTCGGCAAGGAATGTGCCGACTCCTCGTGTGTGCAATTGAGGAGATGCTAACATCTGTCAAGGTAGAGAAGCTTGTGGTAGCAGCAATTCCAGATTTGGTGGAGACATGGACCAAAGGTTTTGGTTTCACGCCTATGGATGCCGCGGAGAAGCAGAAGTTGAACAAAATCAACTTCATGGTTTTTCCTGGAACAATGTTACTTGAAAAACCCTTGTACAAGAAGGAACAAACCGAAGGAACGTGTTATGCTGTGACTACGGCAGCAAATGAACCGACCGAAGTCAATATCAGTTCCGAAGAAATGGCCACTGATAAATCACCACAACAAGATGTTGGAGACATTACCACCGACGAATTGGGTGCTGATAAATTAGAGTCTGAACTTGAATGTAGGAATCACAAAGACACTATTGCTGACAGTGAAACCAGCAGAGATGATAACACTCAAGCCATCCACCTCGAAAACACTGCATTTGACACCAAAAATTCAACAGAAACAAATAACTGTTTTGGAGCAGAGGTCATCCCGGTAATGGTCTCAGACAAGTCTGAGAGATTGTGCAGTGGAGATGGCATGCTTGAACCGAGAACAAGCGATAAAATGCAAACGGTGAATGAGGTCGGACAGCAATCTAGTGAGGACTGTTATGTAAACAAAGATGTTGCTGAGTCAGGTGTAAAAATAGTTATTGACAAGGATGTCAAAGTGGGTGAAGTTCAGGAAAATGCAAATGTGCAGGGCAATTTTTCAAATTTGTCCTGTAAAACATTCATAGGCAGCAATTTTGACATTGATTCTAGTATCGAACGTTCAGGTTTGTATGATGAAGCTGCTGTTTTTGGAACATTTGCAAAGTCTGCAAGTTGA 3525 0.4162 MLQSKPAAKGDVDVTKCKSATGDSNVAKEVAVGKAVASPVSQESFANRLVVTTPSIGALYPLHPEEMSKDLISADMDISDSLSKLDQKDPRTLLQFHILQLLTAAGWSIEKRKRPSRRYIESVYRTPEGKTVREFTKAWRLCGQLLSVEKCNLTYEECKEWTDISQFWFDLSVALINVEKGMNQLETASMLAYRWWVLDPFVVVIFFNRKIGALKKGEVVKSTRTVVSGNNACKRKSAEDIYVVANPNSIGNQCRKISVNKNSMDLVSSPGYRLDSSGTQQSPCSFDILTSSGNSVQLLEGSKVNDVLQAKVGNSQRVNEDIGIEGGVLMEMPEEKNASEVSLALVHYHESEAIQQSNYSDGEGRRISIASVSETDKTCSATSVILKKKTRRRGKRVSQIKLSMLYRSDMEGSTVTEQMQSLNGGPSGTQLALEEAHDDLVDNSGTKRSCRKLSSGSASQQHIRKTNYSLNGMNKSSRCQIKDDDLLVSAIFKNKDSGPNSIRGNSRAKSSKLRGRRKLKSQKGRCRLLPRNLCNGGNHNKDGKRYYLGSRTVLSWLIDNGVISINDVIQYRSPKDDAVIKDGRITKDGVMCKCCSSVFTLSEFKFHAGFALNRPCLNLFMESGEPFTLCLLQAWSSEYKARKSQNQAAKVDNDDKNDDSCGLCGEGGELICCDNCPSTFHLTCLSTQEIPDGNWYCANCTCRICGNLVMDKEASDVCDSLQCSQCEHKYHDKCLKEREKQEGFLLDTWFCGQSCQEVYTGLQSQVGLVNHVSNGFSWMLLRCIHDDQKVHSAQWLALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMIPQLLYNWGSDFARLNFQGFYTVVLEKQDVLTSVACIRVHGTTVAEMPLIATCSRFRRQGMCRLLVCAIEEMLTSVKVEKLVVAAIPDLVETWTKGFGFTPMDAAEKQKLNKINFMVFPGTMLLEKPLYKKEQTEGTCYAVTTAANEPTEVNISSEEMATDKSPQQDVGDITTDELGADKLESELECRNHKDTIADSETSRDDNTQAIHLENTAFDTKNSTETNNCFGAEVIPVMVSDKSERLCSGDGMLEPRTSDKMQTVNEVGQQSSEDCYVNKDVAESGVKIVIDKDVKVGEVQENANVQGNFSNLSCKTFIGSNFDIDSSIERSGLYDEAAVFGTFAKSAS 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60546g00009 1174 Pfam Tify domain binding domain 583 633 IPR032308 -
Stsc60546g00009 1174 MobiDBLite consensus disorder prediction 498 518 - -
Stsc60546g00009 1174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 720 IPR013083 -
Stsc60546g00009 1174 CDD PHD2_CHD_II 660 700 - -
Stsc60546g00009 1174 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 808 932 IPR016181 -
Stsc60546g00009 1174 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 796 958 IPR000182 GO:0016747
Stsc60546g00009 1174 SMART PHD_3 702 756 IPR001965 -
Stsc60546g00009 1174 SMART PHD_3 660 701 IPR001965 -
Stsc60546g00009 1174 MobiDBLite consensus disorder prediction 442 462 - -
Stsc60546g00009 1174 MobiDBLite consensus disorder prediction 447 462 - -
Stsc60546g00009 1174 Pfam PHD-finger 661 702 IPR019787 -
Stsc60546g00009 1174 SUPERFAMILY FYVE/PHD zinc finger 647 701 IPR011011 -
Stsc60546g00009 1174 ProSiteProfiles Zinc finger PHD-type profile. 658 703 IPR019787 -
Stsc60546g00009 1174 PANTHER PHD FINGER FAMILY PROTEIN 16 1036 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60546g00009 Stsc-Chr60546 82547 88804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60546g00009 10 969 PHD Transcription Factor Family AT3G14980 43.603 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60546g00009 TDBD 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60546g00009 - - adu:107459718 2024.21