Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60546g00006 ATGTCGCATCCGGGAAAGCACGCTACCGAGTTGGACTCGGTCACTGACCGATTCCGTGACTCACTCAGTTGCGAGGCTGTCAGTCGCGACGCTAACAAGCCCGATTTCCGCGAACTCGATCTGGGCTCGCCAGTATCGCCGCTTCGTACGGCACACCACGCAATCGGCGCCGCTGGAAACGGAGGACCCGCCGCCAGCACCAGCTCAAGCTCATCCGGATCCTTCTCGGGTCGAACCAACCCGGTTTCAAGAAGATCCGATTCGGGACACACTAACAGCAACGGCAACAACAACCACTCCGGCGAGCTTTCCGGTTCAAGTGAGAACAGCCCCACCGCAACCGGCGGCGGAAACACTCGGATCCTGAAACCGGGTCAAACGAGATCTGATTCAATCTATTCGGGTCAGAATGGAGGCTCCTCCTCCTCATCCTCCTCGGCCGTGAACTCGCCGCCGCTGAACGTCCTCCCCACCGGAAACATCTGTCCCTCCGGTCGGATCGTGAAGACTGGCATGGTGGCGAATCGGAGCTCGAGGAGCGACGTTTTGGGCTCCGGCATGGGAAATTACGGCCACGGAAGCATAATTCGCGGCGGCGGAAAGAGCGGCAGCAGCACCCCTGACTCACCAGGGATCCCAACCGTCCGCTCAAGCATCGGCATTGGCGGCGAAGGCAATGTGGCGAAGCGGGGAGCGCCGCAGGGTTCGGATCCGGAGGAGTTGAAGAGAGCTGGAAATGAGCATTACAAGAGGGGACACTTTGCAGAGGCATTAGGGTTTTATGATCGGGCAATTGCTCTTTCTCCGGCCAGTGCTGCTTACCGGAGCAACCGCGCCGCAGCGCTGACCGGGCTTGGGAGGCTCGGGGAGGCTGTGAGGGAGTGTGAAGAGGCTGTGAGGTTGGATCCTAATTATGGCAGGGCCCATCATCGTTTGGCATGTCTTTTCTTGAGGTTGGGGCAAGTTGAGAATGCAAGGAAGCACCTTTGTTACCCTGGGATGCATCCGGATCCGAATGAGATGCAGAAGTTGCAATTGGTGGAGAAGCATATTGCCAAATGTGGAGATGTAAGAAGGATTAGGGATTGGGAAAGTGTTCTTAGAGAACTTGATGCTGCTATTGCTGCTGGAGCTGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCACTGTTGAAGTTACATCAAATTGACGATGCAGAATCGATTTCGATACATATACCCAAGTCGGAGCCACTTACTAGTTCCTCTTCTCAAGCAAAGTTTTTTGGAATGCTTTCTGAAGCTTATTTGTATTTCGTCAGAGTGCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTAAAGCAGCTGAGAAAGCCAGTCAAATAGACTCCCGGAACGTTGAAGTCGCCGTTTTGGTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTTACCGAAGCTTGCTCGGCATATGGAGATGGTTTGAGGCTTGATCCTTCAAATTCGGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCATGCTTTGAAAATCCAACCTAACTACACTAAGGCTCTTCTTCGAAGGGCTGCATCAAACACTAAGCTTGAAAGGTGGGAAGAAGCAGTCAAAGACTATGAGGTCTTGCGGAAAGAACTTCCAAATAACAATGAAGTTGCCGAAGCTCTTTTCCACGCACAAGTCGCGTTGAAGAAATCTCGTGGGGAAGAAGTATATAATTTAAAATTCGGTGGTGAAGTGGAAGAAGTGTCGGGGCTTGAGCAGTTTAGAGCTGCAATAACTTTGCCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCTAACTCACAATGCAAGCAAATATCGGCATTTGTGGATACACTATGTGGTCGATATCCATCCATCAACTTCCTCAAGGTGGACATTCAAGAAAGCCCGGCAGTTGCAACAGCCGAGAATGTTAGGATTGTACCGACCTTCAAGATATACAAAAACGGCAGCCGAGTGAAGGAAATCGTGTGCCCTAGCCGCGATATGTTGGAACATTCCGTGAGGCATTACAGTTTTTAG 2133 0.5077 MSHPGKHATELDSVTDRFRDSLSCEAVSRDANKPDFRELDLGSPVSPLRTAHHAIGAAGNGGPAASTSSSSSGSFSGRTNPVSRRSDSGHTNSNGNNNHSGELSGSSENSPTATGGGNTRILKPGQTRSDSIYSGQNGGSSSSSSSAVNSPPLNVLPTGNICPSGRIVKTGMVANRSSRSDVLGSGMGNYGHGSIIRGGGKSGSSTPDSPGIPTVRSSIGIGGEGNVAKRGAPQGSDPEELKRAGNEHYKRGHFAEALGFYDRAIALSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHHRLACLFLRLGQVENARKHLCYPGMHPDPNEMQKLQLVEKHIAKCGDVRRIRDWESVLRELDAAIAAGADSSPQLFMCRAEALLKLHQIDDAESISIHIPKSEPLTSSSSQAKFFGMLSEAYLYFVRVQIEMALGRFENAVKAAEKASQIDSRNVEVAVLVNNVRMVARARVRGNDLFKSERFTEACSAYGDGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNHALKIQPNYTKALLRRAASNTKLERWEEAVKDYEVLRKELPNNNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAITLPGVSVVHFEIASNSQCKQISAFVDTLCGRYPSINFLKVDIQESPAVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60546g00006 710 SMART tpr_5 544 577 IPR019734 GO:0005515
Stsc60546g00006 710 SMART tpr_5 476 509 IPR019734 GO:0005515
Stsc60546g00006 710 SMART tpr_5 510 543 IPR019734 GO:0005515
Stsc60546g00006 710 SMART tpr_5 238 271 IPR019734 GO:0005515
Stsc60546g00006 710 SMART tpr_5 272 305 IPR019734 GO:0005515
Stsc60546g00006 710 SMART tpr_5 430 463 IPR019734 GO:0005515
Stsc60546g00006 710 SUPERFAMILY Thioredoxin-like 606 704 IPR036249 -
Stsc60546g00006 710 ProSiteProfiles TPR repeat profile. 510 543 IPR019734 GO:0005515
Stsc60546g00006 710 FunFam TPR repeat-containing thioredoxin TTL4 602 709 - -
Stsc60546g00006 710 SUPERFAMILY TPR-like 480 593 IPR011990 GO:0005515
Stsc60546g00006 710 MobiDBLite consensus disorder prediction 62 157 - -
Stsc60546g00006 710 Pfam Tetratricopeptide repeat 432 461 IPR019734 GO:0005515
Stsc60546g00006 710 MobiDBLite consensus disorder prediction 193 241 - -
Stsc60546g00006 710 SUPERFAMILY TPR-like 237 465 IPR011990 GO:0005515
Stsc60546g00006 710 CDD TRX_family 615 702 - -
Stsc60546g00006 710 MobiDBLite consensus disorder prediction 26 165 - -
Stsc60546g00006 710 Pfam Thioredoxin 617 701 IPR013766 -
Stsc60546g00006 710 Pfam Tetratricopeptide repeat 244 304 - -
Stsc60546g00006 710 Gene3D Glutaredoxin 603 709 - -
Stsc60546g00006 710 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 28 707 IPR044534 -
Stsc60546g00006 710 MobiDBLite consensus disorder prediction 199 213 - -
Stsc60546g00006 710 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Stsc60546g00006 710 Gene3D Tetratricopeptide repeat domain 236 596 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60546g00006 Stsc-Chr60546 30214 34041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60546g00006 475 620 U-box Gene Family AT3G07370 28.415 7.49e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60546g00006 - - gmx:100795358 960.288