Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60543g00010 ATGGGTACCTTGGTATTATTGGTTATCATGCTTTTGTGTGAAGTGTGTTTGGGTGGTGTTCAATCTGTTGGTAAGGTGTATCCAGGATTCAATGGTTCTCAAATGAATTGGATTGATAGGGATGGCAAGTTCCTTGTATCAGACAGTGGGAAATTTACCTTTGGATTTGTCACTACTGCCAATGATAATACACAGTTCCTACTAGAGATTGTTCATGTGAAGAGCAACACTGCGATCTGGACTGCGAATCGAGCAGTTCCCGTTGCAAATTCTGACAATTTTGTGTTTGATGAAAAGGGAAATGCTGTCTTGAAGAAGGGTGGAACAGTTGTATGGTCTACAAACACAAGTGGCAAGGGTGTTTCTTCAATGGAATTGCAAGACAATGGAAATTTGGTGTTGCTTGGAAAGGATAATACAACAGTTATATGGCAGAGTTTCAATTATCCAACAAACACATTGTTGCAAGATCAGAACTTCACAGAGGGAATGAAACTAATCAGTGATCCTGGCTCCAACAATTTGACCTATTCTCTTGAGATGAGTTCAGGAAATGTCATGCTCTATGCTGGTTTCAAGACTCCTCAGCCTTATTGGTCTATGCAGAGTGATAACCGCAAGATCATCAATCAAAACAGCGGTGTGGTGGCTTCGGCAACACTCGGCGAAAATTCCTGGAGGTTCTATGACAAGGGCAGGGCTTTGTTGTCACAATTCATTTTTGATGATGGTTCAGGTTCAGGTTCAGGTTCAGGTTCAGGTAATGATAGCACTTGGGTTGCTGTCTTGGGAACAAATGGATTAATCACTTTCTTTGATCTTGAAGATGGAGGATCAAATTCGCCTTCCACGACAACAATACCTCAAGCATCATGCAATACACCTGAACCTTGTGATCCATATAGCATATGCACAGGGGACAATGGGAAGTGTAACTGCCCTTCTGTTCTGCCTAGTTGCAATCCAGGTTTCGCCTCTGCCTGCGACGATAGCTCCAAGACTTTGGTGAAAGCTGATGATGGACTAAGTTACTTTGCACTCCAATTTCTTAAGCCGTTTTCGAAGACAAATTTGGAAGGTTGCCAAAAATCATGCAATGGAAATTGCTCATGCCTTGCCATGTTTTTACACCTTAGTTCAGGAAACTGTTTCCTATTGGACAGCATAGGTAGTTTTCAGAAGCCTAGCACTGGTTCTGGTTATGTTTCTTACATCAAAATCTCTAGTGATGGAAGAGGTAATAGCAATGGGGGAAGCGGAGGTGGAAGTAGCAATAAGCACACTATAATCACAGTGATCATTGTCATAGTAACATTGCTTGTGATTTCTGGCTTGCTCTTTGTGGGAATTAGGTACTGCCGAAGGAAGCGAAATTTACCCGAGTCACCACAGGAGAATTCAGAAGAGGACAACTTCCTGGAGAATCTAACAGGTGTGCCGATCCGTTACAGCTACAAGGATCTAGAAGCTGCTACAAATCACTTCTCTGTGAAGCTTGGACATGGCGGTTTCGGCTCAGTTTACAAAGGAGTGCTACCGGATCGGACTCAAGTAGCAGTGAAGCAGTTGGAAGGTATTGGCCAAGGGAAGAAAGAGTTTAGAGCTGAAGTTAGCATCATCGGAAGCATCCATCACTTGCATTTGGTTAGGCTCAGAGGTTTCTGTGTAGAAGGCACTCACAAGCTTCTTGTTTATGAGTTCATGGCCAATGGATCATTGGACAAGTGGATATTCAAGAAGAACAATGGCGAGTTTCGGTTGGATTGGGATACAAGGTTCAACATAGCGCTCGGCACAGCTAAAGGTCTCGCTTACCTTCACGACGATTGTGACTCAAAGATCATCCATTGTGACATAAAACCAGAAAATGTGCTTCTAGATGATCATTTCATGGCAAAAATCATCGCCGGAAGGAAAAACTATGATCCGTCGGAAACCTCAGAGAAATCGCATTTCCCAAGCTATGCTATGAAGATGATGGAAGAAGGGAAACTGAGGGAAATCCTTGATTCAGAGTTGGTAGAAGATATGAATGATGAAAGGGTTCATATAGCTATAAAAGTTGCATTGTGGTGCATACAAGAAGACATGGCAATGAGGCCTTCAATGACCAAAGTAGTGCAAATGCTGGAAGGTCTTTGCACTGTTCCTAAGCCACCAACAAGTTCAGCTAACTTGGGTTCTCGCCTTTTCACCAATGTCTTCAATCTCAGTGAAGGAGGCACAACTTCTTCAGGTCCATCAGATTGTAACAGTGATGCATATCTCTCTGCTGTTCGCCTTTCAGGACCAAGATAG 2298 0.4299 MGTLVLLVIMLLCEVCLGGVQSVGKVYPGFNGSQMNWIDRDGKFLVSDSGKFTFGFVTTANDNTQFLLEIVHVKSNTAIWTANRAVPVANSDNFVFDEKGNAVLKKGGTVVWSTNTSGKGVSSMELQDNGNLVLLGKDNTTVIWQSFNYPTNTLLQDQNFTEGMKLISDPGSNNLTYSLEMSSGNVMLYAGFKTPQPYWSMQSDNRKIINQNSGVVASATLGENSWRFYDKGRALLSQFIFDDGSGSGSGSGSGNDSTWVAVLGTNGLITFFDLEDGGSNSPSTTTIPQASCNTPEPCDPYSICTGDNGKCNCPSVLPSCNPGFASACDDSSKTLVKADDGLSYFALQFLKPFSKTNLEGCQKSCNGNCSCLAMFLHLSSGNCFLLDSIGSFQKPSTGSGYVSYIKISSDGRGNSNGGSGGGSSNKHTIITVIIVIVTLLVISGLLFVGIRYCRRKRNLPESPQENSEEDNFLENLTGVPIRYSYKDLEAATNHFSVKLGHGGFGSVYKGVLPDRTQVAVKQLEGIGQGKKEFRAEVSIIGSIHHLHLVRLRGFCVEGTHKLLVYEFMANGSLDKWIFKKNNGEFRLDWDTRFNIALGTAKGLAYLHDDCDSKIIHCDIKPENVLLDDHFMAKIIAGRKNYDPSETSEKSHFPSYAMKMMEEGKLREILDSELVEDMNDERVHIAIKVALWCIQEDMAMRPSMTKVVQMLEGLCTVPKPPTSSANLGSRLFTNVFNLSEGGTTSSGPSDCNSDAYLSAVRLSGPR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60543g00010 765 SUPERFAMILY WD40 repeat-like 108 332 IPR036322 GO:0005515
Stsc60543g00010 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 202 IPR036426 -
Stsc60543g00010 765 ProSiteProfiles Bulb-type lectin domain profile. 30 147 IPR001480 -
Stsc60543g00010 765 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Stsc60543g00010 765 Pfam Protein kinase domain 496 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60543g00010 765 ProSiteProfiles Protein kinase domain profile. 493 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60543g00010 765 SMART blect_4 36 150 IPR001480 -
Stsc60543g00010 765 SMART serkin_6 493 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60543g00010 765 CDD B_lectin 38 150 IPR001480 -
Stsc60543g00010 765 SUPERFAMILY Protein kinase-like (PK-like) 474 711 IPR011009 -
Stsc60543g00010 765 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 633 721 - -
Stsc60543g00010 765 Gene3D - 38 149 IPR036426 -
Stsc60543g00010 765 Gene3D Transferase(Phosphotransferase) domain 1 568 633 - -
Stsc60543g00010 765 FunFam Serine/threonine-protein kinase 32 148 - -
Stsc60543g00010 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Stsc60543g00010 765 FunFam serine/threonine-protein kinase PBS1-like 461 567 - -
Stsc60543g00010 765 Pfam D-mannose binding lectin 77 160 IPR001480 -
Stsc60543g00010 765 PIRSF SRK 1 635 IPR024171 GO:0004674
Stsc60543g00010 765 PIRSF SRK 634 753 IPR024171 GO:0004674
Stsc60543g00010 765 FunFam Os07g0541700 protein 568 650 - -
Stsc60543g00010 765 Gene3D Transferase(Phosphotransferase) domain 1 634 718 - -
Stsc60543g00010 765 Gene3D Phosphorylase Kinase; domain 1 458 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60543g00010 Stsc-Chr60543 59490 61902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60543g00010 430 722 Receptor kinase-like Gene Family AT5G20050 35.890 9.40e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc60543g00010 Pkinase 9.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60543g00010 - - gmx:100791158 1098.19