Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60543g00002 ATGGTGAATTTGCTGCATGGGAAGCTAGATGTGAGTATATATGAGATTGACAAGCTGCAAAATCCTACTCGATTCAACTTTAGTCCTTTCACCAAGGGCACAAGTTCAAACCTGGGGAAGAAATTACTTACCCAACTCAAGAACATTTTTCTCTGCCAATGCCAACCAGACATTCTTCCATTAGGTCTTTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGAAGAACAAGAATGTTAGATGATCAACCAACAAATCCACAATGGAATGAGAAGTTTCACATATATTGTGCACACTTGATCTCACACATTATATTCACTGTCAAACAAGATAACCCTGTTGGGGCAACCCTAATTGGAAGAGCTTATGTCCCAGTTGAACAAGTCATCAATGGTAGCACTGTTGATACTTGGGCTGAAATACTTGATGAGCAGCATCATCCTATACCAGGTGGCTCCAAAATCCATGTTAGAATGCAATACTTTGATGTAAAGAATGATTCAAATTGGTCTCAAGGGCTAAGGAGTCCACAGTTTCAAGGAGTTCCACACACCTTCTTCAACCAAAAATCTGGCTGCAAAGTTACTCTTTACCAAGATGCACATGTCCAGGACAACTTTTCGCCGCGGATCGAGTTGTCCGGAAGGCAATACTATGAGCCTGCAAGATGCTGGAAAGATATCTACAATGCAATAATTGATGCTAAGCATTTCATTTACATAACTGGTTGGTCTGTTTACACTGAGATAAGTTTGGTTAGGGACCAAAACCAAAGGAATTCAAGCATCACACTCGGTGAGCTTCTCAAGAAGAAAGCAAGTGAAGGTGTCAAGGTTCTAATGCTTGTTTGGGATGACAGAACTTCCGTTCCGGATTTCAAGAAAGATGGTTTGATGGCAACACATGATCAAGAAACAGAACAGTACTTTAAGGACACAGATGTGCATTGCATCTTGTGTCCGCGGAATCCGGACGACGGAAGAAGCATTGTTCAAGGTTTTGAGATTTCAACAATGTTCACTCATCACCAAAAGAGTGTGATTCTTGATGGCAAAGTCGAGGGGGAATGGAAGAAGCGAACCGTTGTAAGCTTCATTGGTGGAATTGATCTCTGTGATGGAAGATATGATACTCAGGAACATCCTTTGTTTTCCACTTTGAACACTGTCCACCATGATGATTTCCATCAGCCGAATTTCCCCGGTGCTTCCATAAAAAAAGGCGGTCCGAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAGGGGCCGGTGGCGTGGGATGTTTTGTACAATTTTCAGCAGAGGTGGGAGAAGCAAGTTGGGAAGATGCTCCTATTTTCTTCTAGCATGCAAAATGATTTTCTTGTTCCTCAAGCTACCACGGCGAATACCAATGATGATGAGAGTTGGAATGTTCAAGTTTTTAGGTCCATTGATGGTGGTGCTGCTTCAGGATTCCCTGAAGATCCAGATGAAGCTTGTGAAAGAGGTCTTGTTAGTGGAAAAGATAACATCATTGATAGAAGCATTCAGGATGCATACATCAACGCGATTCGCCGCGCGAAGAATTTCATCTACATTGAGAATCAGTACTTCCTAGGGAGTTCATATGGATGGAAATCATCTGACATAAAAGTTGAGGATATCAATGCTTTGCATCTTATCCCAAAAGAACTTTCATTGAAGATTGTTAGCAAGATCGAAGCCGGGGAAAGGTTTTCGGTCTATGTTGTGATTCCGATGTGGCCGGAAGGAGTGCCTGAGAGTGGCTCAGTTCAAGCAATATTGGATTGGCAGAGGAGGACAATGGAGATGATGTATGCTGATATTGCTGAAGCCATTAGAAGGAAGGGAATTACAGCGCATCCTAGGGACTACTTGACATTCTTCTGCCTTGGAAATCGCGAGGCGAGGCGAGCCGGGGAGTATTCTCCTCCTGAGAAGCCTGAGCCTGGCAGTGATTACAGTAGAGCACAAAAGGCAAGGAGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCAGCAAACATAAACCAAAGATCAATGGATGGTGCAAGAGACAGTGAGATTGCAATGGGTGGATTCCAACCATATCACATAGCATCCAATAATAAGAAACCAAAGGGTCAAATCTATGGATTCAGGCTTTCATTATGGCATGAACATCTTGGTGACACAGATAACAGAAGAATCTTGGAGAATCCAGAGAGTTTGGAATGCATCAAGCATGTGAACAATCTTGCTGACACAAATTGGGACATATATTCAAAGGAGAATTTTGATGAGAAAAGAGCCTTTCACCACCTCTTGAAGTACCCTATTGAGGTATCCAACAATGGAACCATAACAACACTTGAAGGGTTTCAACATTTTCCTGATACCAATGCTAAGATTCTTGGTACCAAATCAGATTACCTTCCACCAATTCTCACCACCTAA 2472 0.4215 MVNLLHGKLDVSIYEIDKLQNPTRFNFSPFTKGTSSNLGKKLLTQLKNIFLCQCQPDILPLGLYATVDLDKARVGRTRMLDDQPTNPQWNEKFHIYCAHLISHIIFTVKQDNPVGATLIGRAYVPVEQVINGSTVDTWAEILDEQHHPIPGGSKIHVRMQYFDVKNDSNWSQGLRSPQFQGVPHTFFNQKSGCKVTLYQDAHVQDNFSPRIELSGRQYYEPARCWKDIYNAIIDAKHFIYITGWSVYTEISLVRDQNQRNSSITLGELLKKKASEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETEQYFKDTDVHCILCPRNPDDGRSIVQGFEISTMFTHHQKSVILDGKVEGEWKKRTVVSFIGGIDLCDGRYDTQEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLYNFQQRWEKQVGKMLLFSSSMQNDFLVPQATTANTNDDESWNVQVFRSIDGGAASGFPEDPDEACERGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDINALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGVPESGSVQAILDWQRRTMEMMYADIAEAIRRKGITAHPRDYLTFFCLGNREARRAGEYSPPEKPEPGSDYSRAQKARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGFQPYHIASNNKKPKGQIYGFRLSLWHEHLGDTDNRRILENPESLECIKHVNNLADTNWDIYSKENFDEKRAFHHLLKYPIEVSNNGTITTLEGFQHFPDTNAKILGTKSDYLPPILTT 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60543g00002 823 FunFam Phospholipase D 479 711 - -
Stsc60543g00002 823 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 665 692 IPR001736 GO:0003824
Stsc60543g00002 823 FunFam Phospholipase D delta 215 478 - -
Stsc60543g00002 823 PIRSF PLD_plant 1 823 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc60543g00002 823 PANTHER PHOSPHOLIPASE D 3 812 IPR015679 -
Stsc60543g00002 823 CDD C2_plant_PLD 4 162 - -
Stsc60543g00002 823 SMART pld_4 338 375 IPR001736 GO:0003824
Stsc60543g00002 823 SMART pld_4 665 692 IPR001736 GO:0003824
Stsc60543g00002 823 SUPERFAMILY Phospholipase D/nuclease 167 447 - -
Stsc60543g00002 823 Pfam Phospholipase D C terminal 742 813 IPR024632 -
Stsc60543g00002 823 ProSiteProfiles C2 domain profile. 1 139 IPR000008 -
Stsc60543g00002 823 SMART C2_3c 8 138 IPR000008 -
Stsc60543g00002 823 Gene3D C2 domain 6 173 IPR035892 -
Stsc60543g00002 823 SUPERFAMILY Phospholipase D/nuclease 511 703 - -
Stsc60543g00002 823 Pfam C2 domain 7 140 IPR000008 -
Stsc60543g00002 823 Gene3D Endonuclease Chain A 210 468 - -
Stsc60543g00002 823 Gene3D Endonuclease Chain A 469 704 - -
Stsc60543g00002 823 Pfam Phospholipase D Active site motif 666 692 IPR001736 GO:0003824
Stsc60543g00002 823 Pfam Phospholipase D Active site motif 338 375 IPR001736 GO:0003824
Stsc60543g00002 823 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 164 IPR035892 -
Stsc60543g00002 823 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 338 375 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60543g00002 Stsc-Chr60543 11321 16306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60543g00002 3 823 Phospholipase D Gene Family (Wang group) AT3G15730 65.496 0.0 1121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60543g00002 K01115 - gmx:100791688 1307.74