Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60543g00001 ATGAAATCATACTTGCTCTCTCTTCGAATCATCACTTCCTTTCAAATCATATTTATTGTCATATTTAACTCTCTTGAACATGTTAAAAACTTGACGAAAAAGATCGTTGGAAGGAGGCTATATGCAACAGTTGATCTAGACAAAGCAAGAGTTGGAAGAACAAGAATGATAGGCAACCAACATTCCCACCCAAAATGGAATGAAACATTTGAAATATACTGTGCTCACAACATCTCTGAAATCATCTTCACCGTCAAAGATGGCAACCCAATTGGTGCAACTCTCATTGGGAGAGCCTTCATTCACTCCCAAGAACTCCTCAAGGGCCGCGCCGTTAGCAGATGGCTCGAGATTCTCGACGAAGAAGACCGCCGTCCAGTCCACGGCGCTCGAATCCGTGTTACCATTCAGTACTTTTATATAACGGAATATTCCACTGGGATAACGCCGTCGTTTAACGGCGTCCCTAGAACATTCTTTGACCAGAGACAAGGTTGCAAGGTTACATTGTACCAAGATGCTCATGTTCTTCATGGAGGACTACCTTGGATTGCGGTATCCGGAGGGAAATACTATGAGCATGCTCGGTGTTGGGAAGATATTTATGATTCCATGATGAATGCCAAACATTTGATTTACATTACAGGCTGGTCTGTTTATACAGAGATTACGTTGGTTAGGGACAAAACGACGAGGCCTAATAATGTTGTAACGCTTGGGGAGATTCTTAAGGCGAAAGCCGAGGAGGGTGTTCGAGTTCTTATGCTTGTTTGGGACGATAGATCTTCTGTCCCGGAGTTCAAGAAAGATGGGTTGATGGGGACGCATGATCAAGAAACTGAACAGTATTTTAGGAATACTAAAGTGAAATGTGTTTTGTGCCCGCGAAATCCTGATGATGGGAGAAGCATTGTCCAGGGATTTCAGATCTCGACAATGTTCACCCATCATCAGAAGAGTGTGGTCCTTGATGGCAATGTCGAAGGGAGCAGTAAGAGAGGGATTATAAGTTTTGTTGGTGGGATTGATCTTTGTGATGGGAGATATGATACTCAAGAACACCCTTTGTTTTCGACTTTAAACACCGTCCACCGTGATGACTTCCATCAGCCGAATTTCCCCGGCGCTTCGATCAAGAAAGGCGGCCCGAGGGAGCCGTGGCATGACGTGCATTGCAAGTTAGAAGGACCGGTTGCTTGGGATGTGTTGTATAATTTTGAACAGAGGTGGGAGAAGCAAGTTGGGAGGAACAATGTTAATAATCAAAACTTATTATTCACACTTGATGAGCTTGATCAAATTCTTGTGCATCCAAATGAGGCTGCTAGAATTGAAGATGATAGGGATTCTTGGAACGTTCAACTGTTCAGGTCAATCGACGGCGGCGCGGTTTATGGATTCCCGCAGAACCCTGAAGAAGCTGCAGAATTAGGCCTTGTTAGTGGCAAAGACAATGTGATTGATAGAAGCATTCAAGATGCATACATTCATGCGATTCGGCGCGCAAAGAATTTCATCTATATTGAGAATCAGTACTTCTTAGGGAGTTCATATGGTTGGAAATCATCTGATATAAAAGTTCCGGATATTAATGCCTTGAATCTTATACCAAAGGAGCTTTCACTCAAGATCTGTAAGAGCATTGAAGCAGGACTAAGGTTTGCTGTTTATGTTGTGATTCCGATGTGGCCGGAAGTGGATGATGAATACATCATAATTGGTTCAGCCAACATAAACCAAAGATCAATGGATGGAGGAAGAGACACAGAGATAGCAATGGGGGCATACCAACCACACCACATAGCGACACGTGTCCCCAAACCGAGGGGACACGTGCACGCGTTTCGAAGAGCACTATGGTACGAACACCTGGGAGACCCACTAGCACTGGACGAGGTTTTCAACCGGCCAGAGAGTTTGGAGTGTGTGAAGCTTGTGAACCATCTTGGTGAGAGGAATCGGGAGTTGTATACCAAAGATGAGTTTGATGAGAACATAACACTTCATCACTTGTTGCAGTACCCTATAAAGGTGTCAAGTGATGGATCCATAACAACGTTGTCTGGGTTTGAATGTTTTCCAGATACTAAGGCTCATGTTCTTGGATCAAAATCTGACTACCTTCCTCCAATACTTACCACCTAG 2145 0.4392 MKSYLLSLRIITSFQIIFIVIFNSLEHVKNLTKKIVGRRLYATVDLDKARVGRTRMIGNQHSHPKWNETFEIYCAHNISEIIFTVKDGNPIGATLIGRAFIHSQELLKGRAVSRWLEILDEEDRRPVHGARIRVTIQYFYITEYSTGITPSFNGVPRTFFDQRQGCKVTLYQDAHVLHGGLPWIAVSGGKYYEHARCWEDIYDSMMNAKHLIYITGWSVYTEITLVRDKTTRPNNVVTLGEILKAKAEEGVRVLMLVWDDRSSVPEFKKDGLMGTHDQETEQYFRNTKVKCVLCPRNPDDGRSIVQGFQISTMFTHHQKSVVLDGNVEGSSKRGIISFVGGIDLCDGRYDTQEHPLFSTLNTVHRDDFHQPNFPGASIKKGGPREPWHDVHCKLEGPVAWDVLYNFEQRWEKQVGRNNVNNQNLLFTLDELDQILVHPNEAARIEDDRDSWNVQLFRSIDGGAVYGFPQNPEEAAELGLVSGKDNVIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYGWKSSDIKVPDINALNLIPKELSLKICKSIEAGLRFAVYVVIPMWPEVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPHHIATRVPKPRGHVHAFRRALWYEHLGDPLALDEVFNRPESLECVKLVNHLGERNRELYTKDEFDENITLHHLLQYPIKVSSDGSITTLSGFECFPDTKAHVLGSKSDYLPPILTT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60543g00001 714 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 312 348 IPR001736 GO:0003824
Stsc60543g00001 714 FunFam Phospholipase D delta 188 429 - -
Stsc60543g00001 714 Pfam C2 domain 38 117 IPR000008 -
Stsc60543g00001 714 Pfam Phospholipase D Active site motif 312 348 IPR001736 GO:0003824
Stsc60543g00001 714 SMART pld_4 566 582 IPR001736 GO:0003824
Stsc60543g00001 714 SMART pld_4 312 348 IPR001736 GO:0003824
Stsc60543g00001 714 SUPERFAMILY Phospholipase D/nuclease 149 415 - -
Stsc60543g00001 714 PIRSF PLD_plant 6 565 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc60543g00001 714 PIRSF PLD_plant 566 714 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc60543g00001 714 SUPERFAMILY Phospholipase D/nuclease 479 632 - -
Stsc60543g00001 714 Gene3D C2 domain 25 148 IPR035892 -
Stsc60543g00001 714 Gene3D Endonuclease Chain A 183 434 - -
Stsc60543g00001 714 PANTHER PHOSPHOLIPASE D 26 565 IPR015679 -
Stsc60543g00001 714 SMART C2_3c 20 115 IPR000008 -
Stsc60543g00001 714 Pfam Phospholipase D C terminal 631 704 IPR024632 -
Stsc60543g00001 714 Gene3D Endonuclease Chain A 460 565 - -
Stsc60543g00001 714 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 139 IPR035892 -
Stsc60543g00001 714 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60543g00001 Stsc-Chr60543 6348 8992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60543g00001 553 714 Phospholipase D Gene Family (Wang group) AT3G15730 59.877 2.89e-52 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60543g00001 K01115 - gmx:100794115 779.245