Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60541g00010 ATGATGGCTCTCAGCAAACACTCCATTTACAACCAAATCCAACAAACCTCTCTTTCCAACACTTATCTATGGCTTCTCTTTTTCACCATCAGCTTCCTATTCGTCTTCCTCTTCAACCTCACAAAAAAACCCACCAAAACCAACATGAACCTTCCACCATCGCCACCAAAACTACCCTTCATCGGAAACCTCCTCCAGCTAGGCACACTCCCCCACCGCTCCCTTCGAACCCTCTCTCAAACTTACGGCGACATCATGATGCTACAACTGGGCCAAAGAGCCCACCCAACTCTCGTGGTTTCATCCGCACAAATTTCAAAAGAAATAGCCAAAAACCACGACCTAGTTTTCTCAAACCGCCCCCAAAACACGGCCACCAAGATCTTGCTGTACGGCGCCACCGACGTCGGGTTCGGGCTCTACGGAGACGACTGGAGGAAGAAGAGGAAGATTATCGTGCTCCAGCTTCTGAGCACGAGGAGGGTGCAATCATTCAGATCCATCAGAGAAGAAGAAGTTATGGAGACAGTGAAGGAGTTGGTGGAAGCGAGTTTGAAGGGCAAAACGGTAAATTTGGGAAAGATGGTGGTTTCAACTGCGAACAACATAGTTTGTAAGTGTGCTTTGGGAGGAACGTACGGAAAAGAAGGTGGGATTCAAGATTTGGCGCGAAGGGTGATGATTTACCTGACGGCTTTTACTGTTGGGGATTATTTTCCGGCATTAGGTTGGGTTGATGTGGTTAGTGGTAAGATTGGGAGGTATAGAGAGACTTTTAGAAAGTTGGATTGTTTGTTTGATAAGGTTATTGAAGAGCATAAGATGATGATGGCAAAGAAGAAGGAAGAAGAAGGTGATTATGATGATGATAAGAAGAAGAAGAAGGACTTGGTGGATGTACTGCTTGAGATTCAACAAGATGGCATGGTTGATGGAGACTATGAGCTTTCAAACAATGACCTCAAAGCACTTCTCATGGACATGTTTGTAGGTGGCACCGATACAACTTCAGCAACAATAGAATGGGCAATGACAAGGCTTGTGAAGAATCCTGAGAGCATGAAGAAAGTTCAACAAGAAGTGAGAAGTGTTGTGGGGCGTAACAATTCATCAAAAGTGGAAGAAAACCACATCAACCAAATGCACTACCTCAAGTGTGTTGTGAAGGAGACTCTACGCTTGCATCCACCTTGCACCGTTTTGCCTCCACGAGAGACAATGGCCTCTCTCAAACTCAATGGCTACGATATTCCAGACAAAACAATGGTACTAACTAATGTATGGGCAATTCAAAGGGACCCAAAATTGTGGGAAAAGGCAGAAGAGTTCATGCCTGAGAGATTTGAGAAGAGTGAAATTGATTTCAATGGTGATCAATGGTTTGAGTTCCTTCCATTTGGGTATGGGAGAAGGGGGTGCCCTGGCATGTTCTTTGGGGTTGCCACTGTTGAGTATGTTCTTGCTACTCTTCTTTATTGGTTCGATTGGAAGCTTCCAGAAGATGTTTCATCTGTTGATGACATTGATATGGGTGAGGAATATGGACTCGTTGTCTCAAAGAAAGTACCTCTTCACCTTAAACCAATAGCACATGTTAAAGTGCTTAATTAA 1611 0.4444 MMALSKHSIYNQIQQTSLSNTYLWLLFFTISFLFVFLFNLTKKPTKTNMNLPPSPPKLPFIGNLLQLGTLPHRSLRTLSQTYGDIMMLQLGQRAHPTLVVSSAQISKEIAKNHDLVFSNRPQNTATKILLYGATDVGFGLYGDDWRKKRKIIVLQLLSTRRVQSFRSIREEEVMETVKELVEASLKGKTVNLGKMVVSTANNIVCKCALGGTYGKEGGIQDLARRVMIYLTAFTVGDYFPALGWVDVVSGKIGRYRETFRKLDCLFDKVIEEHKMMMAKKKEEEGDYDDDKKKKKDLVDVLLEIQQDGMVDGDYELSNNDLKALLMDMFVGGTDTTSATIEWAMTRLVKNPESMKKVQQEVRSVVGRNNSSKVEENHINQMHYLKCVVKETLRLHPPCTVLPPRETMASLKLNGYDIPDKTMVLTNVWAIQRDPKLWEKAEEFMPERFEKSEIDFNGDQWFEFLPFGYGRRGCPGMFFGVATVEYVLATLLYWFDWKLPEDVSSVDDIDMGEEYGLVVSKKVPLHLKPIAHVKVLN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60541g00010 536 PANTHER CYTOCHROME P450 71B11-RELATED 34 529 - -
Stsc60541g00010 536 FunFam Cytochrome P450 83B1 39 527 - -
Stsc60541g00010 536 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Stsc60541g00010 536 SUPERFAMILY Cytochrome P450 52 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 Gene3D Cytochrome P450 37 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 Pfam Cytochrome P450 52 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 199 217 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 79 98 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00010 536 CDD CYP71-like 81 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60541g00010 Stsc-Chr60541 76698 81727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60541g00010 29 529 Cytochrome P450 AT3G26170 42.718 8.90e-133 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60541g00010 K20617 - gmx:100781909 602.053