Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60541g00007 ATGGACATGAATACTACAACTTATTGTCTCCAAATTCTCGCTACCATTTTAGCTTTCTTAATCGCATACTTCACCATAAGGTACATTAGATCACATAATAATAATGGATCCAAGAAAAGAAATGGCAAAACCAAAGTTCCTGAAATACCAGGTGGTTTACCCATCATAGGTCACCTCCATCTTCTCAGTGACAAAATCCCATATTTTAGAACCTTCTCAGACATGGCCGAAAAGTACGGCTCAATTTTCGCTCTCCGACTTGGCTGCCACCCCACTATCATGGTTAGCAGCGCAGAGCTTGCCAAGGAATGCCTCACAAGGAAAGATAGAGTCTTTGCCTCGCGGCCGGACACGGCCGGAGGCAGGTTCATGGGCTACAACAACGCGATTTTTGGTCTCGCGCCGTACGGACCGTACTGGCGCGAGATCAGAAAAATAGCGACGCTCGAGGTCCTCTCGAGTTACAGACTTGAGAAGCTGAAACACATCAGAGACAGAGAAGTTTATGCTCTTGTGAAAGATTTGTTCAGTTTTAGAAACTCGAATGGTTTAGTTAGGATAAGTAATTTGTTAGAGCACATGACATTTAACATTAATGTGCAGATGATAGCAGGGAAAAGGTTCAGTGATGAAGCAATTAATGAAGAAGATAGTGAAGGATGGAGATTAAGGAAAGCAATTAGAGATGCTACTTATCTTTTTGGTGTTTTTGTTTTTGCTGATGCTATTCCATGGCTTGGTTGGTTTGATTTTCAAGGTTATGTGGGTTTTATGAAGAGAACTGCTAAGGAATTGGACTCTATTCTTCATAGGTGGATGGTTGATCATATGAGAAAAAGGGGTGATGATAATGATGAGAATGACAGTAAATCTGAGAATGATTTCTTGGATGTGCTAATTTCAGCATTTGAAGAAAATGATGAGATTTATGGGCATAAGAAGGACATAGTTCTCAAAGCAACAACACTGATGCTAGTCCTAACTGGATCAGGAAGCACAGCCATGACATTAACATGGTCACTATCCTTACTCTTGAACCACCCAACTGCCATGAATGCTGCCAAACAAGAGTTAGATACCATCGTTGGAAGACACAAATGGGTCCAAGAGTCACACATCAAAGACCTCAAATATCTCCAAGCCATTGTCAAAGAGACTCTTCGCCTCTACCCACCCGCACCCTTAACCGGAATAAGGGAAGCCACCGAAGATTGCTATCTAAACGGTTACCATGTCTTAAAGGGCACTCGCTTGTTTATTAATCTATGGAAGCTCCATAGGGATCCCAAAACATGGTCTAATCCTAATGCTTTTGAGCCTGAGAGGTTCCTTAATGCTTGTTCGGGGATCGATTTTCGCGGTCAGGACTTCGAGTTTATCCCGTTTAGCTCCGGACGAAGGTCGTGCCCCGGCATGACCTTTGGAATGCAAGTTGTGCATCTGACATTGGCGAGGTTGATTCAAGGTTTTGATATGTCAACAAAGGGTGGTAGTCAAGTTGATATGAGTGAAGGGTTGGGTGTGGCCTTGCCTAAGAAGAATGCACTTGATATTCTTCTCAAACCTCGTCTTCCTTTGGAGCTTTATGAAGGCCTTTGA 1599 0.429 MDMNTTTYCLQILATILAFLIAYFTIRYIRSHNNNGSKKRNGKTKVPEIPGGLPIIGHLHLLSDKIPYFRTFSDMAEKYGSIFALRLGCHPTIMVSSAELAKECLTRKDRVFASRPDTAGGRFMGYNNAIFGLAPYGPYWREIRKIATLEVLSSYRLEKLKHIRDREVYALVKDLFSFRNSNGLVRISNLLEHMTFNINVQMIAGKRFSDEAINEEDSEGWRLRKAIRDATYLFGVFVFADAIPWLGWFDFQGYVGFMKRTAKELDSILHRWMVDHMRKRGDDNDENDSKSENDFLDVLISAFEENDEIYGHKKDIVLKATTLMLVLTGSGSTAMTLTWSLSLLLNHPTAMNAAKQELDTIVGRHKWVQESHIKDLKYLQAIVKETLRLYPPAPLTGIREATEDCYLNGYHVLKGTRLFINLWKLHRDPKTWSNPNAFEPERFLNACSGIDFRGQDFEFIPFSSGRRSCPGMTFGMQVVHLTLARLIQGFDMSTKGGSQVDMSEGLGVALPKKNALDILLKPRLPLELYEGL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60541g00007 532 PANTHER CYTOCHROME P450 82C3-RELATED 18 529 - -
Stsc60541g00007 532 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 Gene3D Cytochrome P450 32 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 FunFam Cytochrome P450 82C4 36 521 - -
Stsc60541g00007 532 Pfam Cytochrome P450 47 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Stsc60541g00007 532 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60541g00007 532 SUPERFAMILY Cytochrome P450 50 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60541g00007 Stsc-Chr60541 54564 57972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60541g00007 47 529 Cytochrome P450 AT4G31970 47.368 3.68e-155 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60541g00007 K17961 - gmx:100787489 707.983