Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00017 ATGATCTCTGCAGATTCTTGTGCTGAGAATTTTGCTGCTTCCATGAACGGATTCATATATGAGAATGCTCCTATGCCTGTGTTCTCCAATAGTAATAATAATCACAACCCTGGAAATGTGTTCAAGTTTGAAGATTCATCTCCAAACCATTCAGAATCTCCTACTAGTGATGATCCTGGTGGCACAAATAATGGAGAATCACACACAGAGAGTACTAAGCACTCAAACCCTATTCTCAGATACATAACTGAAATTCTCATGGATGAGGAAGATGATTTGCAGCAAAAGCCATGTATGTTGCATGATTGTTTGAAGCTTCAGGCTGCTGAGAAAGGCTTCTACGATGCCCTCGGCCGCAGCTACCCTTCGTCGCCCTCGAAGATCCATGGTGATTTTAGAGATGATTGCCATGACCCTGATGATAGTAATTTTGGTAGAACAACTAGCTCTGACAGCAATAGTAGCAGCTACAACACTAGTGAAAATTCATGTGAGTCTGATTGGTTCAATGGATGGGGGGATTTTGAGTCCAAATTCCTTCAAAACTCTCTAATTGATTCCCCAGAAATGAAGAACTCCTATGAGGTTTTAGGGTTAGGTAATGCTCAAATTAGGGATTTACATGGTTCTGTCTATTTTCAAAATGGAACCTTGAACAACATAATTCCAGATTTTCTGCCACCAATTACTGGAGGAGGTAGTAGTAGATCAAGGGAAAAGAGAAGCCATCATATGGATGATGTCACACAAGAAGGGGAGAGAGGAAACAAGCTCTCAGCTGTGTATGCCGATGAGTCGGAGCCATTGGAGATGTTTGATGCAGTGCTGCTTTGTCAGGATGGCAAGAGTCCTGCCATATTTTGCGGCGACAGCGAATCGTTGCCGGTTGTGGCAAACTCGGGTGGATCTAATGTGAGGACAAGCCGTTCGAAGAAAGGTGCCAACAAGGGTGGAGCTACCAACAAAGGGGGAACCTTAAGTACAACAGTTGATTTATGGAGTCTCCTAACTCAATGTGCACAAGCTGTGGCAAGCTATGATCAGAGGAGTGCCAATGAGATACTCAAGCAGATTAGGCAGAACTGTCCTGATTCTGGCGACGGGCTCCAGCGTTTGGCTAAGTACTTCGCCGATGGCCTGGAGTCGAGGTTAGCTGCCGGGACACCCAAGTATATCCTCCTTCAGTCATTATCTGCTGCAGATATGCTAAAGGCATACAAAGTGTACATCACGGCCATCCCATTTCAAAGGATGTCGAATTTCATGGCTAATAGGACTATTCTGAAGCTAGCAGAGAATGAGAGCAGTCTTCACATTATTGATTTTGGCATTTTCTATGGTTTTCAGTGGCCTTGTCTCATTCAGCGCCTTTCAGAAAGACCCGGAGGGCCTCCAAGGCTTCGGATCACTGGAATTGATCTTCCTCAGCCTGGATTCAGGCCTACAGAAAGGGTTGAGGAGACAGGGCGACGCTTGAAAAACTATTGCAAGAGGTTTGGGGTCCCATTTGAGTACAATTGCCTTGCACAGAAGTGGGAAACCATACAACTAGAAGATCTCAAAATCGATAGGAATGAAGTGACCGTTGTTAACTGTCTATACAGATTGAAGAACCTGTCTGATGAGACCGTGACGGTGAACTGTCCAAGGGATGCTGTATTAAGGTTGATCAGGAGGATAAATCCAAACATCTTTATCCATGCTGTGGTCAATGGCACTTACAATGCCCCATTTTTCCTGACTCGGTTCAGGGAGGCGCTCTTCCACTTCTCAGCATTGTTCGACATGTTTGAGGCCACGGTGCCACGCGACAATCCACATAGGCTGATGTTTGAGAAGGGGTTGTTTGGAAGAGATGCCATCAATGTCATAGCATGTGAAGGGGCTGAAAGAGTAGAAAGGCCAGAGACCTATAAGCAGTGGCAGGTTAGGAACAGAAGAGCAGGGTTCAAGCAACTTGCAATTGCACCAGAGCTACTAAAAAGGGTCAAAGAAATGGTGAAGAAGGAATATCATAAAGATTTTGTAGTGGATGAAGATGGAAAATGGGTCATGCAAGGATGGAAAGGGAGAATTCTCCATGCTCTCTCTCCTTGGGTTCCTGCTTAA 2109 0.4495 MISADSCAENFAASMNGFIYENAPMPVFSNSNNNHNPGNVFKFEDSSPNHSESPTSDDPGGTNNGESHTESTKHSNPILRYITEILMDEEDDLQQKPCMLHDCLKLQAAEKGFYDALGRSYPSSPSKIHGDFRDDCHDPDDSNFGRTTSSDSNSSSYNTSENSCESDWFNGWGDFESKFLQNSLIDSPEMKNSYEVLGLGNAQIRDLHGSVYFQNGTLNNIIPDFLPPITGGGSSRSREKRSHHMDDVTQEGERGNKLSAVYADESEPLEMFDAVLLCQDGKSPAIFCGDSESLPVVANSGGSNVRTSRSKKGANKGGATNKGGTLSTTVDLWSLLTQCAQAVASYDQRSANEILKQIRQNCPDSGDGLQRLAKYFADGLESRLAAGTPKYILLQSLSAADMLKAYKVYITAIPFQRMSNFMANRTILKLAENESSLHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDLPQPGFRPTERVEETGRRLKNYCKRFGVPFEYNCLAQKWETIQLEDLKIDRNEVTVVNCLYRLKNLSDETVTVNCPRDAVLRLIRRINPNIFIHAVVNGTYNAPFFLTRFREALFHFSALFDMFEATVPRDNPHRLMFEKGLFGRDAINVIACEGAERVERPETYKQWQVRNRRAGFKQLAIAPELLKRVKEMVKKEYHKDFVVDEDGKWVMQGWKGRILHALSPWVPA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 229 256 - -
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 298 322 - -
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 128 144 - -
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 128 160 - -
Stsc60540g00017 702 Pfam GRAS domain family 334 699 IPR005202 -
Stsc60540g00017 702 ProSiteProfiles GRAS family profile. 323 700 IPR005202 -
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 145 160 - -
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 30 76 - -
Stsc60540g00017 702 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 250 693 IPR005202 -
Stsc60540g00017 702 MobiDBLite consensus disorder prediction 236 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00017 Stsc-Chr60540 97106 99694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00017 78 702 GRAS Transcription Factor Family AT1G07530 45.170 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc60540g00017 GRAS 1.2e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00017 - - lja:Lj3g3v3213190.1 934.48