Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00016 ATGGATCCAAATTATCCTATAGGAGGCAGTGATGATTTCATGAACAGCATCCAAATTGGTGAAGATGGCACCATAATATTCTCTGATGATCAAAATCAATTTTATTATGATGCCAACCAACACCTTGATCCTCTTTATCAGCATGTTGCAGACCAACTATTTGATGAATTTCCTCAGTACACAAGCCATGTAGAAGAAGCTGCAGCTGCTCCTGTTGCCTCCACCGTGGTGGATCCTTCCATTGAGGACACTGATTTCTCAGAAACAGCAAAGTTTATAACTCAGGTTCTCATGGAAGAGGGCGTTGAACAAAGGCCATTCTATGACCCTTTCAGCTTGAATGCCACTGAGCAATCCTTCTATGATGCTCTCAATGATGTTCTCATAGACAACATCAACATGCCCCTCTCCCCCAATCAACACCCTCTTGATGTTCATCATCAAGGTGGAACAACCAGCAGCAGCAGCAGCGGCAGCAACAGTGGCAACAACAGCAGCAATAACAACCCTGTTGATGACAATTCTAGTGAGTTTCTGAAGCCTTCTGTTTCTCCTGATACCTTTAGCTCTGGTGATCATGTTTTTCAGTTTAACTCCCGTGCCATTTCTCAACATGATTCAATTGCGTCCTATGTTAATAATCATGGGGTGTATGATGGGGATACTTCTATTACCAAGCTCCTGGCTCAAAATATTTTCAGTGACTCAGATTCTGTCTCCCAGTTCAAGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCCTCCAGGACCTCAGCTTGTGACTGGTTTCGAGACCACACCGGCTGCCACGGTGCCTCTAGAACCAAAGGGGGATAAAGCCATTGGGTTAAAGGGCAGAAAGAATCATGAACGAGAAGAAGGGAGTGATGATAGAGAAGAGGGGAGGAGGAGTAGCAAGCAATCGGCAATTGGCGGTGTTGTTGATGAGAGTGAATTATCTGATATGTTTGATAAAGTGTTGCTTAGTATTGGTGTGCCAATGTGTGTTCCAGTGAACAATGAAGTAGAGAAAGCTTCTAATCCCTCAAACTCTAATGGAGGGAAGGGTCGTCCTAAGAGACAAGGGAAGAAGAAAGAAACCATTGATCTGANNNNNNNNNNAACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCTTGTGACAACAGGACTGCCAATGAGCTTCTCAAGCAGATTAGGCAACATTCAAGTCCCTCTGGAGATGCAACACAGAGATCAGCTCATTACTTCGCCAATGGCCTTGAAGCACGCTTACATGGTGATGGCACTGGAACACAAGGATTCTATACCTTTCTCAGCACCAAGAGGTTAAGTGCTGCTGAGTTTTTGAAAGCTTACAAGGTGTTCATGGAAGTCATCCCCTCCACAAAGTTTGCAAATTTCTTTGCAAACAAAATGATTATGAAAGCATCTCAAGAGGCAGACATACTTCATATCATTGATTTTGGTATTTTATATGGTTTCCAGTGGCCAATACTAATTAAGTTCCTCAAAGAAAGAGAAACTGGACCCCCCAAGAAGCTGAAGATCACAGGAATAGAGTTTCCCCAACCTGGTTTTCGTCCTGCAGAAAGAATTCAGGAGACTGGTCGTCGTCTTGCTAGCTACTGCGAGCGTTTCGAAATTCCCTTTGAGTATAATGCCATAGCATCAAGGAACTGGGAAACCATCCAGGTTGAAGACCTTAAAATTGAGAGCAATGAGTTTCTTGCTGTGAACTGTCATAAGAGGTTTGAGAATTTGATGGATGAAACACTTGAAGCAAACAGTCCCAGAGATGCAGTATTGCAGTTGATCAGGAAGATAAATCCGGATATTTTTGTTCAGACCATTGTTAATGGATCTTATAATGCACCTTTCTTTGCCACAAGATTCAGAGAGGCACTGTTCCATTTTTCTGCAATTTATGACATGTGTGATGCCGTCATACCCCGTGAAGATGAGATGAGGATGAAGATTGAGAGAGAGATTATAGGCCGGGAGGTTATGAATGTTGTGGCATCCGAAGGTTTTGAAAGGATTGATAGGCCTGAGACATACAAGCAATGGCAGGCTAGGATTACAAGGGCTGGATTCAAGCAGCTACCATTGAAAGAGGAACTAATGGCCAAATTTTCAGCCAAGTTAAAGGAATGGTACCACAAAGACTTTGTCTTGGATGAGGACAGCAACTGGATGCTTCAAGGTTGGAAGGGCCGCGTTTTATACGCTTCCACTTGTTGGGTGCCTGCATAG 2256 0.434 MDPNYPIGGSDDFMNSIQIGEDGTIIFSDDQNQFYYDANQHLDPLYQHVADQLFDEFPQYTSHVEEAAAAPVASTVVDPSIEDTDFSETAKFITQVLMEEGVEQRPFYDPFSLNATEQSFYDALNDVLIDNINMPLSPNQHPLDVHHQGGTTSSSSSGSNSGNNSSNNNPVDDNSSEFLKPSVSPDTFSSGDHVFQFNSRAISQHDSIASYVNNHGVYDGDTSITKLLAQNIFSDSDSVSQFKRGLEEASKFLPPGPQLVTGFETTPAATVPLEPKGDKAIGLKGRKNHEREEGSDDREEGRRSSKQSAIGGVVDESELSDMFDKVLLSIGVPMCVPVNNEVEKASNPSNSNGGKGRPKRQGKKKETIDLXXXXTLLVLCAQAVSACDNRTANELLKQIRQHSSPSGDATQRSAHYFANGLEARLHGDGTGTQGFYTFLSTKRLSAAEFLKAYKVFMEVIPSTKFANFFANKMIMKASQEADILHIIDFGILYGFQWPILIKFLKERETGPPKKLKITGIEFPQPGFRPAERIQETGRRLASYCERFEIPFEYNAIASRNWETIQVEDLKIESNEFLAVNCHKRFENLMDETLEANSPRDAVLQLIRKINPDIFVQTIVNGSYNAPFFATRFREALFHFSAIYDMCDAVIPREDEMRMKIEREIIGREVMNVVASEGFERIDRPETYKQWQARITRAGFKQLPLKEELMAKFSAKLKEWYHKDFVLDEDSNWMLQGWKGRVLYASTCWVPA 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00016 751 MobiDBLite consensus disorder prediction 257 313 - -
Stsc60540g00016 751 ProSiteProfiles GRAS family profile. 364 749 IPR005202 -
Stsc60540g00016 751 MobiDBLite consensus disorder prediction 341 366 - -
Stsc60540g00016 751 Pfam GRAS domain family 375 748 IPR005202 -
Stsc60540g00016 751 MobiDBLite consensus disorder prediction 132 185 - -
Stsc60540g00016 751 MobiDBLite consensus disorder prediction 342 356 - -
Stsc60540g00016 751 MobiDBLite consensus disorder prediction 279 305 - -
Stsc60540g00016 751 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 306 744 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00016 Stsc-Chr60540 82444 85741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00016 91 751 GRAS Transcription Factor Family AT1G07530 48.179 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc60540g00016 GRAS 5.3e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00016 - - gmx:100795855 783.867