Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00015 ATGCCTTTGAAAATGGATCCTAATTTCAACTCCAGCTTCATCAATGGATTTAGATTCAGCCAAGTTCCCATTATTCCCAATGTAGAGGAACAGTGGCCTGATCCTGTGAATGGGTTGGAATCCATGAACTCTGGATTCATGAATGGCCCTTTTCTTCTTCCACCTGATCCAAACAATGCTCCAAATCTTGCTTCTTCCATGTCCACCGTTACTACTGCAGATGAAGATTCTCCCTTGGATGATACTGATTTCTCTGCAACCGTGCTACGGTACATAAACCAGATGCTTATGGAAGAGGACATGGAGGAGAAGCCTTGTATGTTCCATGATTCATTGGCTTTACAAGCTGCTGAGAAATCATTGTATGATGCCATTGGTGGGACATCCCTTCCTCCTCCTCCTTCCATACAGCATCATGTTCAAAACTACCACAATGTTGAAAGCCCTAATGATAGCCTCTCTAGTAATTTCAGTGGTTATAGCAGCGTTGGCACCACTAGTACCAGCAACTCGGTTGAGTCTCATTGGAGCAACTATGACCCTTCAGAGTATAAGCCTTCTATACTGCAAACCCCCTTTCCTGCTGACTTTGTTTTTCAGGCCAGTTCGATCCCCAGAACACAGTCTTCCGTGAGCAATAGCAGTAGCTTTACTATAGCCAACAATGGTGGTGGATTGTTGGGGAGTTCAGGTGCTGGATTTTTGGATTCTGAGTTTCTCAGCAAGAGTGAGTCCATGCTGCAGTTTGAGAGGGGAATGGAGGAAGCCAGTAAGTTTCTTCCTAAGGGGAATCCATTGATTATTGACTTGGAGAATAGCTCCTTTAACCTTTCTTTTCAAAAGGCTCCTCAGCAGGTGGCAGTTAAGGAGGAGAGAGATGAAAGGGAGTATTTTTCTAGTGAGTCAAAAGGAAGAAAGAATCACGAGCGGGAAGACCAATTGGAATTTCAAGATGGGAGGAGCAACAAACAGTCTGCAATTTACAGGGAAGACAGTGAGCTATCAGAATTGTTTGATAAAATACTGCTGGGCACAGGGTGTGGAAAAGGGGCACCTCCCAGGTGCATTCTTGACGATGGCAAACCTAATGGACAAGATAAGAACGTTCAGAAAAAGGAAGAAACAAACAAGTCTAGCAGCGGAAATAATCGAGTTAAGAAACAAGGTAATAAGAAAGGAGTTGTTGATCTGAGGACACTATTGGTTCTATGCGCACAAGCCGTTTCATCTGATGATCGTTCAACTGCTAATGAATTATTGAAGCAGATTAGACAGCACTCTTCACGTCTAGGTGATGGGTCTCAGAGGCTGGCACATTGCTTTGCAAATGCCCTTGAAGCACGCTTGGCTGGCTCTGGCACCCAGTTATATACTTCTCTGACCTCCAAAAGAAAATCTGCTGCAGATATGGTGAAAGCATACCAAATGTTCATATCAGCCTGCCCATTCAAGAAGCTTGCTATCATTTTTGCAAACCATACAATTCTGAACCTAGCCAAGCCCAAGGAAGTGGAAACTCTTCACATTGTTGATTTTGGTATCCGTTACGGCTTCCAGTGGCCTGCCCTTATATTTCGCCTATCAAAAAGACCTGGTGGTCCTCCCAAGCTTCGCATAACAGGGATAGAGCTCCCACAACCAGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGGCGTCGCCTAGCTAAGTATTGTGAACGCTTTGATGTTCCTTTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAATTGAGGACCTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTGTATGGTTCGGTTTAAGAATCTACTTGATGAGACTGTTGTGTTGAATAGTCCCAGGGACGCCGTCTTGAAATTAATTAGGAAGGCCAATCCTAATATATTTATACATGCAACTGTCAATGGGAACTACAATGCCCCATTCTTTGTGACTCGGTTCCGGGAGGCTCTTTTTCATTACTCTACATTGTTTGACGTGCTTGACACCAATGTCGATCGTGAAGATCCAATGAGGTTGATGTTTGAGGAGGAGTTCTTTGGCAGGGAGGTAGTGAATATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGCGACCTGAAACATACAAGCAATGGCAGGTTCGGAATGCAAGGGCAGGGTTTAGGCAACTCCCCTTGGATAACCAACTCATTCACAAACTAAGATGTAAACTGAAAGATACATACCATAGTGATTTCATGCTTGATGTGGATGGCAACTACATGCTGCAAGGTTGGAAGGGCCGAATCATTTATGCTTCCTCTTGTTGGGTACCAGCATAG 2319 0.4416 MPLKMDPNFNSSFINGFRFSQVPIIPNVEEQWPDPVNGLESMNSGFMNGPFLLPPDPNNAPNLASSMSTVTTADEDSPLDDTDFSATVLRYINQMLMEEDMEEKPCMFHDSLALQAAEKSLYDAIGGTSLPPPPSIQHHVQNYHNVESPNDSLSSNFSGYSSVGTTSTSNSVESHWSNYDPSEYKPSILQTPFPADFVFQASSIPRTQSSVSNSSSFTIANNGGGLLGSSGAGFLDSEFLSKSESMLQFERGMEEASKFLPKGNPLIIDLENSSFNLSFQKAPQQVAVKEERDEREYFSSESKGRKNHEREDQLEFQDGRSNKQSAIYREDSELSELFDKILLGTGCGKGAPPRCILDDGKPNGQDKNVQKKEETNKSSSGNNRVKKQGNKKGVVDLRTLLVLCAQAVSSDDRSTANELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKSAADMVKAYQMFISACPFKKLAIIFANHTILNLAKPKEVETLHIVDFGIRYGFQWPALIFRLSKRPGGPPKLRITGIELPQPGFRPAERVQETGRRLAKYCERFDVPFEFNAIAQKWETIKIEDLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFFGREVVNIIACEGSERVERPETYKQWQVRNARAGFRQLPLDNQLIHKLRCKLKDTYHSDFMLDVDGNYMLQGWKGRIIYASSCWVPA 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00015 772 ProSiteProfiles GRAS family profile. 388 770 IPR005202 -
Stsc60540g00015 772 MobiDBLite consensus disorder prediction 286 326 - -
Stsc60540g00015 772 MobiDBLite consensus disorder prediction 360 380 - -
Stsc60540g00015 772 Pfam GRAS domain family 397 769 IPR005202 -
Stsc60540g00015 772 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 312 763 IPR005202 -
Stsc60540g00015 772 MobiDBLite consensus disorder prediction 352 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00015 Stsc-Chr60540 78304 80993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00015 88 772 GRAS Transcription Factor Family AT1G07530 56.633 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc60540g00015 GRAS 6.2e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00015 - - ahf:112736647 1380.93