Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00009 ATGACGGTGACGATCGTTCCGAGGTGCAGATGGAGGTTGCCATTAAGCAACTCAATCGTAACGGCCACCAGCTTTCAGGGGCATAAGGAGTGGATTAATGAAGTGAACTTGTTGGGGGTGATCAAGCATCCGAATCTTGTGAGGTTGGTGGGGTATTGTGCAGAGGATGATGAAAGAGGGATTCAGAGACTTCTTGTGTATGAGCTTATGCCTAATAAGAGCTTGGAAGACCATCTTCTGGCTAGAGTCTCGGCGATGCCAACGCTACCATGGACCACGAGATTAAAAATTGCGCAAGATGCAGCACGTGGTTTGGCATACCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAGACGTCCAACATTTTGCTGGATGAGGATTTCAATGCAAAGCTTTCCGATTTTGGACTTGCTAGGCAAGGTCCCTCAGAAGGGCTGGGCTATGTTTCAACAGCAGTTGTCGGTACCATAGGTTATGCTGCTCCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGACGTGTGGAGCTTCGGTGTAGTTCTTTACGAGCTTATCACTGGTAGGAGAGCGGTAGAACGGAACCTACCAAGAAATGAACAGAAGCTCTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAAGTTCCATGTTATAGTAGACCCCAAACTTGAAGGACAATATTGCATGAAATCAGCTCATAAACTCGCAACTCTAGCGAACAAGTGCCTCATGAAGCAGCCTAAGTCCCGCCCGAAAATGAGTGATGTGGTTGAGTTTCTTGGAAACATTCTCAACGATACTATTCAGGACGAATGTATTCCTCAAGCTGTTGTAGCCAGCAGAGAAGAGAGAGTGAAGCCATCATCCTCCGTCGAGGACATAGTACCTGAACCAGCTGCAAAGCAAGGGAACAATTATCTGAAGAAGGTTTTTGAGTTTAGAGACATGATGAGCTTAAGAAACAAATCCACTGGAAGGATAGATTGGAAAAATTGGGCACCTGGGCTTGTAAGAACTTGGTGA 1044 0.454 MTVTIVPRCRWRLPLSNSIVTATSFQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYELMPNKSLEDHLLARVSAMPTLPWTTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGLGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRPYVSDPRKFHVIVDPKLEGQYCMKSAHKLATLANKCLMKQPKSRPKMSDVVEFLGNILNDTIQDECIPQAVVASREERVKPSSSVEDIVPEPAAKQGNNYLKKVFEFRDMMSLRNKSTGRIDWKNWAPGLVRTW 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00009 347 Gene3D Phosphorylase Kinase; domain 1 17 70 - -
Stsc60540g00009 347 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 70 279 - -
Stsc60540g00009 347 SUPERFAMILY Protein kinase-like (PK-like) 27 294 IPR011009 -
Stsc60540g00009 347 PANTHER OS01G0588500 PROTEIN-RELATED 24 269 - -
Stsc60540g00009 347 Gene3D Transferase(Phosphotransferase) domain 1 71 288 - -
Stsc60540g00009 347 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60540g00009 347 Pfam Protein kinase domain 28 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00009 Stsc-Chr60540 38142 41037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00009 23 268 Glycoside Hydrolase AT3G07070 50.813 4.27e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60540g00009 Pkinase 4.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00009 - - gmx:100811825 553.903