Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00008 ATGAAGTGCTTCCACTTCCCAAGCGTGGAAAGAGATAACCGCCGAGACTTAGACAACGAAGACGGCGTCGTTTCAAGCAGCTGCAGAACATCAAGAGTCTCATGGGCTCGCTCCCTCAGCGTCGCTTCTTCAACCCTCGTTCGCAACTCCGAGTTCGACGACACCGACTCTTCCTTCAACGACACCCTCGCTTTTCACGACTTCCTCTCTCTCCGCCGCGCCAACAACCTCCTTCTCTTCTCCTTCTCCAACCTCAAAGCCGCCACTCGCGGATTCAGCAGGTCCCTCTTGATCGGCGAGGGTGGCTTCGGCCCTGTCTACAGGGGCACCGTTTCCGTTCCCGATGACGGTGACGATCGTTCCGAGGTGCAGATGGAGGTTGCCATTAAGCAACTCAATCGTAACGGCCACCAGGGGCATAAGGAGTGGATTAATGAAGTGAACTTGTTGGGGGTGATCAAGCATCCGAATCTTGTGAGGTTGGTGGGGTATTGTGCAGAGGATGATGAAAGAGGGATTCAGAGACTTCTTGTGTATGAGCTTATGCCTAATAAGAGCTTGGAAGACCATCTTCTGGCTAGAGTCTCGGCGATGCCAACGCTACCATGGACCACGAGATTAAAAATTGCGCAAGATGCAGCACGTGGTTTGGCATACCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAGACGTCCAACATTTTGCTGGATGAGGATTTCAATGCAAAGCTTTCCGATTTTGGACTTGCTAGGCAAGGTCCCTCAGAAGGGCTGGGCTATGTTTCAACAGCAGTTGTCGGTACCATAGGTTATGCTGCTCCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGACGTGTGGAGCTTCGGTGTAGTTCTTTACGAGCTTATCACTGGTAGGAGAGCGGTAGAACGGAACCTACCAAGAAATGAACAGAAGCTCTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAAGTTCCATGTTATAGTAGACCCCAAACTTGAAGGACAATATTGCATGAAATCAGCTCATAAACTCGCAACTCTAGCGAACAAGTGCCTCATGAAGCAGCCTAAGTCCCGCCCGAAAATGAGTGATGTGGTTGAGTTTCTTGGAAACATTCTCAACGATACTATTCAGGACGAATGTATTCCTCAAGCTGTTGTAGCCAGCAGAGAAGAGAGAGTGAAGCCATCATCCTCCGTCGAGGACATAGTACCTGAACCAGCTGCAAAGCAAGGGAACAATTATCTGAAGAAGGTTTTTGAGTTTAGAGACATGATGAGCTTAAGAAACAAATCCACTGGAAGGATAGATTGGAAAAATTGGGCACCTGGGCTTGTAAGAACTTGGTGA 1380 0.4841 MKCFHFPSVERDNRRDLDNEDGVVSSSCRTSRVSWARSLSVASSTLVRNSEFDDTDSSFNDTLAFHDFLSLRRANNLLLFSFSNLKAATRGFSRSLLIGEGGFGPVYRGTVSVPDDGDDRSEVQMEVAIKQLNRNGHQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYELMPNKSLEDHLLARVSAMPTLPWTTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGLGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRPYVSDPRKFHVIVDPKLEGQYCMKSAHKLATLANKCLMKQPKSRPKMSDVVEFLGNILNDTIQDECIPQAVVASREERVKPSSSVEDIVPEPAAKQGNNYLKKVFEFRDMMSLRNKSTGRIDWKNWAPGLVRTW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00008 459 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 182 391 - -
Stsc60540g00008 459 ProSiteProfiles Protein kinase domain profile. 92 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60540g00008 459 FunFam Serine/threonine-protein kinase BIK1 61 181 - -
Stsc60540g00008 459 Gene3D Transferase(Phosphotransferase) domain 1 182 400 - -
Stsc60540g00008 459 Pfam Protein tyrosine and serine/threonine kinase 97 379 IPR001245 GO:0004672|GO:0006468
Stsc60540g00008 459 PANTHER OS01G0588500 PROTEIN-RELATED 55 381 - -
Stsc60540g00008 459 SUPERFAMILY Protein kinase-like (PK-like) 74 379 IPR011009 -
Stsc60540g00008 459 CDD STKc_IRAK 98 382 - -
Stsc60540g00008 459 Gene3D Phosphorylase Kinase; domain 1 62 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00008 Stsc-Chr60540 38142 41037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00008 80 380 Glycoside Hydrolase AT3G07070 50.498 6.12e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60540g00008 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00008 - - gmx:100811825 674.47